Strain Fitness in Pseudomonas putida KT2440 around PP_1198

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,372,352	+		PP_1197	0.42	-2.1
1,372,412	+		PP_1197	0.46	-0.4
1,372,412	+		PP_1197	0.46	-1.3
1,372,412	+		PP_1197	0.46	+1.8
1,372,413	-		PP_1197	0.46	-0.9
1,372,413	-		PP_1197	0.46	-0.5
1,372,413	-		PP_1197	0.46	-0.3
1,372,418	+		PP_1197	0.46	-1.6
1,372,418	+		PP_1197	0.46	-2.2
1,372,418	+		PP_1197	0.46	+2.1
1,372,419	-		PP_1197	0.47	-0.7
1,372,419	-		PP_1197	0.47	-0.1
1,372,419	-		PP_1197	0.47	+0.9
1,372,419	-		PP_1197	0.47	-1.3
1,372,419	-		PP_1197	0.47	+1.7
1,372,419	-		PP_1197	0.47	-1.5
1,372,514	+		PP_1197	0.54	-2.4
1,372,514	+		PP_1197	0.54	-0.4
1,372,514	+		PP_1197	0.54	+0.8
1,372,515	-		PP_1197	0.54	-1.3
1,372,565	+		PP_1197	0.58	+0.8
1,372,701	-		PP_1197	0.68	-0.2
1,372,706	+		PP_1197	0.68	+0.1
1,372,707	-				+0.4
1,372,707	-		PP_1197	0.68	-1.0
1,372,707	-		PP_1197	0.68	+1.0
1,372,804	+		PP_1197	0.75	-0.2
1,373,006	+				-0.7
1,373,007	-				-0.9
1,373,007	-				+0.3
1,373,024	+				+0.6
1,373,024	+				+1.6
1,373,025	-				-0.2
1,373,092	+				+0.8
1,373,093	-				-0.5
1,373,258	+				+1.0
1,373,307	+				-2.0
1,373,307	+				-0.3
1,373,307	+				+0.2
1,373,308	-				+1.3
1,373,329	-				+0.6
1,373,332	+				+0.3
1,373,332	+				-0.4
1,373,332	+				-0.1
1,373,333	-				+0.2
1,373,333	-				+1.2
1,373,333	-				+0.6
1,373,333	-				-0.6
1,373,333	-				-0.8
1,373,333	-				-2.2
1,373,350	-				+0.1
1,373,350	-				-0.7
1,373,350	-				-0.3
1,373,350	-				-0.7
1,373,367	-		PP_1198	0.12	-1.1
1,373,434	-		PP_1198	0.35	-1.2
1,373,434	-		PP_1198	0.35	-0.5
1,373,443	-		PP_1198	0.38	-0.7
1,373,456	+		PP_1198	0.42	+0.4
1,373,457	-		PP_1198	0.42	-1.3
1,373,457	-		PP_1198	0.42	+0.8
1,373,637	-				+0.3
1,373,637	-				-0.2
1,373,695	-		PP_1199	0.23	-0.7
1,373,695	-		PP_1199	0.23	+0.0
1,373,736	+		PP_1199	0.35	+0.9
1,373,737	-		PP_1199	0.35	+0.0
1,373,739	+		PP_1199	0.36	-0.3
1,373,739	+		PP_1199	0.36	-1.3
1,373,740	-		PP_1199	0.36	-1.7
1,373,740	-				+2.1
1,373,751	-				+0.6
1,373,751	-		PP_1199	0.40	-1.8
1,373,751	-		PP_1199	0.40	+1.1
1,373,751	-		PP_1199	0.40	+2.0
1,373,850	+		PP_1199	0.69	+0.4
1,373,909	+		PP_1199	0.87	-0.4
1,373,909	+		PP_1199	0.87	-1.8
1,373,909	+		PP_1199	0.87	+0.4
1,373,971	-				+0.1
1,373,983	+				-0.1
1,373,983	+				+0.0
1,373,983	+				+2.0
1,373,984	-				-1.8
1,373,984	-				+1.0
1,373,984	-				-0.5
1,373,984	-				-1.7
1,373,984	-				+0.1
1,373,984	-				+0.6
1,373,991	-				+0.9
1,373,991	-				+0.7
1,374,044	+				-1.7
1,374,044	+				+0.6
1,374,046	+				-0.2
1,374,047	-				+0.2
1,374,047	-				-0.1
1,374,047	-				+0.2
1,374,068	+				-2.3
1,374,069	-				-0.0
1,374,117	-				+1.6
1,374,117	-				-0.3
1,374,290	+				+0.1
1,374,290	+				-2.0
1,374,345	-				+1.3
1,374,504	+				+1.4
1,374,504	+				-2.3
1,374,504	+				-0.2
1,374,504	+				+0.8
1,374,505	-				-2.4
1,374,505	-				-1.2
1,374,505	-				+0.6
1,374,505	-				+0.1
1,374,618	+		PP_1200	0.12	-1.2
1,374,619	-		PP_1200	0.12	-1.7