Strain Fitness in Pseudomonas putida KT2440 around PP_1167

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,341,282	+				+0.9
1,341,283	-				+0.9
1,341,309	+				-2.4
1,341,309	+				+1.5
1,341,310	-				-1.3
1,341,402	-				+2.4
1,341,402	-		PP_1166	0.12	-0.4
1,341,495	+		PP_1166	0.22	+0.2
1,341,503	+		PP_1166	0.23	+0.5
1,341,503	+		PP_1166	0.23	-0.7
1,341,504	-		PP_1166	0.23	-0.7
1,341,504	-		PP_1166	0.23	+0.1
1,341,504	-		PP_1166	0.23	-1.1
1,341,504	-		PP_1166	0.23	-0.5
1,341,655	+		PP_1166	0.39	-0.2
1,341,916	+		PP_1166	0.67	-0.1
1,342,172	+				+0.7
1,342,173	-				-0.1
1,342,173	-				+0.7
1,342,193	+				-2.4
1,342,268	+				+0.1
1,342,272	+				-0.3
1,342,314	+				-0.4
1,342,314	+				+1.8
1,342,314	+				+0.7
1,342,315	-				-0.8
1,342,315	-				+1.1
1,342,315	-				+0.9
1,342,350	+				+0.5
1,342,384	+				-1.0
1,342,385	-				-1.0
1,342,611	+		PP_1167	0.27	-2.2
1,342,680	+		PP_1167	0.32	-0.3
1,342,733	+		PP_1167	0.36	+1.2
1,342,734	-		PP_1167	0.36	+0.1
1,342,734	-		PP_1167	0.36	-2.0
1,342,734	-		PP_1167	0.36	-1.0
1,342,734	-		PP_1167	0.36	-1.2
1,342,957	-		PP_1167	0.54	-1.7
1,343,079	+		PP_1167	0.63	+0.3
1,343,401	+		PP_1167	0.88	+1.5
1,343,402	-		PP_1167	0.88	+0.9
1,343,488	-				+1.6
1,343,488	-				-0.0
1,343,553	+				+0.4
1,343,554	-				+0.2
1,343,754	+		PP_1168	0.35	+0.3
1,343,754	+		PP_1168	0.35	-0.3
1,343,757	+		PP_1168	0.35	-0.6
1,343,757	+		PP_1168	0.35	-0.7
1,343,757	+		PP_1168	0.35	+0.3
1,343,757	+		PP_1168	0.35	+0.9
1,343,758	-		PP_1168	0.35	+0.2
1,343,758	-		PP_1168	0.35	-0.9
1,343,758	-		PP_1168	0.35	-0.2
1,343,758	-		PP_1168	0.35	-0.8
1,343,758	-		PP_1168	0.35	-1.2
1,343,758	-		PP_1168	0.35	+1.5
1,343,843	-		PP_1168	0.50	-1.1
1,343,843	-		PP_1168	0.50	+0.6
1,343,906	+		PP_1168	0.61	+0.7
1,343,906	+		PP_1168	0.61	+0.9
1,343,907	-		PP_1168	0.61	-0.4
1,343,965	-				+0.6
1,344,079	+				-0.8
1,344,079	+				-1.2
1,344,080	-				+0.9
1,344,148	-				-2.3
1,344,163	+				-2.5
1,344,183	+				-0.4
1,344,405	-		PP_1169	0.27	+0.4
1,344,405	-		PP_1169	0.27	+0.2
1,344,441	+		PP_1169	0.30	+0.3
1,344,441	+		PP_1169	0.30	-0.2
1,344,441	+		PP_1169	0.30	+1.7
1,344,442	-		PP_1169	0.30	-1.0
1,344,442	-		PP_1169	0.30	-1.4
1,344,442	-		PP_1169	0.30	+1.2
1,344,442	-		PP_1169	0.30	+0.3
1,344,444	+		PP_1169	0.31	-2.7
1,344,445	-		PP_1169	0.31	-0.6
1,344,445	-		PP_1169	0.31	+1.4