Strain Fitness in Pseudomonas putida KT2440 around PP_1049

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,199,524	+		PP_1048	0.31	-1.1
1,199,525	-		PP_1048	0.32	-0.9
1,199,644	+		PP_1048	0.41	-2.2
1,200,359	+				+0.3
1,200,360	-				-2.2
1,200,360	-				+0.1
1,200,360	-				-0.5
1,200,428	+		PP_1049	0.18	-1.7
1,200,428	+		PP_1049	0.18	-1.7
1,200,543	+		PP_1049	0.43	+0.4
1,200,543	+		PP_1049	0.43	+0.7
1,200,544	-				+1.7
1,200,544	-		PP_1049	0.44	-0.6
1,200,544	-		PP_1049	0.44	-1.6
1,200,544	-		PP_1049	0.44	-2.1
1,200,648	+		PP_1049	0.66	-1.7
1,200,649	-		PP_1049	0.67	-1.3
1,200,688	-		PP_1049	0.75	-2.7
1,200,688	-		PP_1049	0.75	-1.1
1,200,730	-		PP_1049	0.84	-1.0
1,200,798	+				-1.5
1,200,799	-				-0.3
1,201,157	+		PP_1050	0.82	+1.0
1,201,275	+		PP_1051	0.20	-1.1
1,201,320	+		PP_1051	0.31	+0.2
1,201,321	-		PP_1051	0.31	+0.5
1,201,418	+		PP_1051	0.55	-0.7
1,201,419	-		PP_1051	0.55	+0.7
1,201,574	+				-2.8
1,201,575	-				-1.9
1,201,575	-				-2.1
1,201,575	-				-0.8
1,201,575	-				+0.1