Strain Fitness in Pseudomonas putida KT2440 around PP_1042

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,189,667	+		PP_1039	0.81	-0.8
1,189,677	+		PP_1039	0.82	+1.2
1,189,677	+		PP_1039	0.82	+2.8
1,189,677	+		PP_1039	0.82	-2.5
1,189,678	-		PP_1039	0.82	+1.3
1,189,678	-		PP_1039	0.82	+0.5
1,189,678	-		PP_1039	0.82	+1.1
1,189,678	-		PP_1039	0.82	-0.8
1,190,271	-		PP_1041	0.73	-1.5
1,190,299	-		PP_1041	0.85	+0.2
1,190,349	-				+0.4
1,190,349	-				-0.2
1,190,349	-				-1.7
1,190,384	+				+2.2
1,190,421	-				+1.5
1,190,731	+		PP_1042	0.26	-0.8
1,190,842	+		PP_1042	0.38	+2.3
1,190,843	-		PP_1042	0.38	-1.9
1,190,847	-		PP_1042	0.38	-0.8
1,191,142	+		PP_1042	0.69	+1.6
1,191,142	+		PP_1042	0.69	+1.5
1,191,143	-		PP_1042	0.69	+1.3
1,191,143	-		PP_1042	0.69	-0.2
1,191,143	-		PP_1042	0.69	+0.2
1,191,396	-				-2.1
1,191,443	-				-1.9
1,191,460	+				+0.2
1,191,461	-				+1.5
1,191,679	-				-0.9
1,191,679	-				-0.3
1,191,680	+				+1.3
1,191,681	-				-1.2
1,191,742	-				-1.1
1,191,882	-		PP_1043	0.15	+0.2
1,192,169	+		PP_1043	0.29	-0.0
1,192,169	+		PP_1043	0.29	+1.3
1,192,171	+		PP_1043	0.29	+0.7
1,192,171	+		PP_1043	0.29	-1.5
1,192,171	+		PP_1043	0.29	+0.3
1,192,171	+		PP_1043	0.29	-0.3
1,192,171	+		PP_1043	0.29	-1.5
1,192,172	-		PP_1043	0.29	-1.3
1,192,172	-		PP_1043	0.29	+0.2
1,192,172	-		PP_1043	0.29	+0.8
1,192,283	+		PP_1043	0.34	-0.6
1,192,283	+		PP_1043	0.34	-0.0
1,192,284	-		PP_1043	0.34	+0.8
1,192,284	-		PP_1043	0.34	+2.5
1,192,342	+		PP_1043	0.37	-0.4
1,192,343	-		PP_1043	0.37	+0.8
1,192,343	-		PP_1043	0.37	+0.4
1,192,377	-		PP_1043	0.39	-0.3
1,192,377	-		PP_1043	0.39	-0.7