Strain Fitness in Pseudomonas putida KT2440 around PP_1022

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,164,655	+		PP_1021	0.13	-0.1
1,164,656	-		PP_1021	0.13	+0.6
1,164,656	-		PP_1021	0.13	-0.1
1,164,701	+		PP_1021	0.19	+0.4
1,164,701	+		PP_1021	0.19	+0.3
1,164,702	-		PP_1021	0.19	-0.9
1,164,702	-		PP_1021	0.19	+0.4
1,164,702	-		PP_1021	0.19	-0.5
1,165,148	-		PP_1021	0.70	-0.6
1,165,163	+		PP_1021	0.72	-0.4
1,165,163	+		PP_1021	0.72	+0.3
1,165,479	-				-1.6
1,165,503	+				-0.6
1,165,529	+				-0.3
1,165,552	+				-1.7
1,165,834	+		PP_1022	0.15	+0.9
1,165,834	+		PP_1022	0.15	-1.6
1,165,877	+		PP_1022	0.18	-0.5
1,165,910	+		PP_1022	0.20	+0.9
1,165,958	+		PP_1022	0.23	+0.3
1,165,958	+		PP_1022	0.23	+0.6
1,166,141	+		PP_1022	0.36	-1.8
1,166,242	+		PP_1022	0.43	+0.1
1,166,471	+		PP_1022	0.58	-0.8
1,166,471	+		PP_1022	0.58	-1.2
1,166,582	-		PP_1022	0.66	+1.7
1,166,681	+		PP_1022	0.72	-0.2
1,166,681	+		PP_1022	0.72	+1.3
1,166,681	+		PP_1022	0.72	-3.1
1,166,681	+		PP_1022	0.72	-1.8
1,166,681	+		PP_1022	0.72	+1.1
1,166,716	+		PP_1022	0.75	-0.2
1,166,870	+		PP_1022	0.85	-2.3
1,166,870	+		PP_1022	0.85	-0.7
1,166,871	-		PP_1022	0.85	-0.4
1,166,981	-				+1.0
1,166,981	-				+2.1
1,166,981	-				+0.8
1,167,079	+				+1.1