Strain Fitness in Pseudomonas putida KT2440 around PP_0928

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,069,447	-		PP_0927	0.45	+0.2
1,069,447	-		PP_0927	0.45	+0.9
1,069,562	+		PP_0927	0.53	-2.6
1,069,562	+		PP_0927	0.53	-0.1
1,069,562	+		PP_0927	0.53	+2.4
1,069,562	+		PP_0927	0.53	+0.1
1,069,563	-		PP_0927	0.53	+1.6
1,069,563	-				+1.3
1,069,567	+		PP_0927	0.53	-1.5
1,069,568	-		PP_0927	0.54	-2.0
1,069,581	-		PP_0927	0.54	-0.3
1,069,613	+		PP_0927	0.57	+0.1
1,069,613	+		PP_0927	0.57	+0.3
1,069,614	-		PP_0927	0.57	+1.0
1,069,703	-		PP_0927	0.63	+0.8
1,069,703	-		PP_0927	0.63	-1.4
1,069,703	-		PP_0927	0.63	-0.9
1,069,733	+		PP_0927	0.66	-1.5
1,069,733	+		PP_0927	0.66	+0.8
1,069,734	-		PP_0927	0.66	-0.2
1,069,748	+		PP_0927	0.67	+0.0
1,069,748	+		PP_0927	0.67	-0.8
1,069,748	+		PP_0927	0.67	-0.5
1,069,749	-		PP_0927	0.67	+0.6
1,069,756	+		PP_0927	0.67	-0.7
1,069,762	+		PP_0927	0.68	-1.3
1,069,763	-		PP_0927	0.68	+0.2
1,069,763	-		PP_0927	0.68	-1.8
1,069,763	-		PP_0927	0.68	-2.1
1,069,763	-		PP_0927	0.68	-1.7
1,069,763	-		PP_0927	0.68	+0.5
1,069,889	+		PP_0927	0.77	+0.1
1,069,890	-		PP_0927	0.77	-0.6
1,070,025	-		PP_0927	0.87	-1.8
1,070,054	+		PP_0927	0.89	+0.4
1,070,054	+		PP_0927	0.89	+0.6
1,070,054	+		PP_0927	0.89	+0.0
1,070,054	+		PP_0927	0.89	+0.0
1,070,055	-		PP_0927	0.89	+0.5
1,070,088	+				-1.0
1,070,089	-				-1.9
1,070,096	+				-1.9
1,070,096	+				-2.5
1,070,096	+				-0.0
1,070,096	+				-1.5
1,070,214	+				-0.2
1,070,221	+				+1.2
1,070,222	-				+0.2
1,070,222	-				+0.2
1,070,296	-				-1.7
1,070,376	+				-0.3
1,070,376	+				-0.2
1,070,389	+				+0.6
1,070,405	+				+0.9
1,070,406	-				-0.7
1,070,409	+				-0.5
1,070,409	+				-2.2
1,070,409	+				+1.5
1,070,409	+				-1.2
1,070,410	-				+1.9
1,070,410	-				-1.0
1,070,410	-				+0.6
1,070,410	-				-1.8
1,070,410	-				-0.5
1,070,450	-		PP_0928	0.10	-0.6
1,070,458	+		PP_0928	0.11	-0.7
1,070,458	+		PP_0928	0.11	-1.1
1,070,481	+		PP_0928	0.13	-0.5
1,070,482	-		PP_0928	0.13	-0.1
1,070,541	+		PP_0928	0.19	+0.3
1,070,542	-		PP_0928	0.19	-0.4
1,070,579	+		PP_0928	0.23	-0.8
1,070,579	+		PP_0928	0.23	-0.0
1,070,579	+		PP_0928	0.23	-0.7
1,070,579	+		PP_0928	0.23	+0.0
1,070,580	-		PP_0928	0.23	-2.8
1,070,580	-		PP_0928	0.23	-2.1
1,070,580	-		PP_0928	0.23	+0.3
1,070,788	+		PP_0928	0.43	+0.0
1,070,791	+		PP_0928	0.43	+1.2
1,070,791	+		PP_0928	0.43	-1.1
1,070,791	+		PP_0928	0.43	-0.4
1,070,792	-		PP_0928	0.43	-1.2
1,070,792	-		PP_0928	0.43	+1.6
1,070,792	-		PP_0928	0.43	+0.3
1,070,792	-		PP_0928	0.43	-2.9
1,070,882	+		PP_0928	0.52	-0.1
1,070,882	+		PP_0928	0.52	-1.1
1,070,896	+		PP_0928	0.53	-0.3
1,070,897	-		PP_0928	0.53	+0.7
1,070,946	+		PP_0928	0.58	+0.5
1,070,959	-		PP_0928	0.59	+0.9
1,070,992	-		PP_0928	0.62	+1.9
1,071,011	+		PP_0928	0.64	-1.8
1,071,011	+		PP_0928	0.64	-0.5
1,071,012	-		PP_0928	0.64	+0.3
1,071,012	-		PP_0928	0.64	-2.7
1,071,012	-		PP_0928	0.64	+0.4
1,071,164	+		PP_0928	0.79	+0.3
1,071,165	-		PP_0928	0.79	-1.3
1,071,240	-		PP_0928	0.86	-0.3
1,071,259	+		PP_0928	0.88	-0.3
1,071,287	+				-0.5
1,071,287	+				+0.8
1,071,287	+				-1.5
1,071,287	+				-2.3
1,071,287	+				+0.1
1,071,287	+				+0.6
1,071,345	-				+0.7
1,071,398	-				-1.9
1,071,455	-				+0.2
1,071,465	-				+0.7
1,071,566	+		PP_0929	0.32	-1.4
1,071,573	-		PP_0929	0.34	-2.1
1,071,573	-		PP_0929	0.34	+1.1
1,071,573	-		PP_0929	0.34	-1.4
1,071,650	-		PP_0929	0.54	+0.4
1,071,711	+		PP_0929	0.71	-1.3
1,071,712	-		PP_0929	0.71	+0.9
1,071,712	-		PP_0929	0.71	+0.7
1,071,714	+		PP_0929	0.71	+1.6
1,071,714	+		PP_0929	0.71	-1.3
1,071,714	+		PP_0929	0.71	-0.7
1,071,714	+		PP_0929	0.71	+1.3
1,071,715	-		PP_0929	0.72	+0.8
1,071,815	+				-1.6
1,071,815	+				-0.1
1,071,815	+				-2.1
1,071,815	+				+0.5
1,071,816	-				-0.7
1,071,816	-				+0.7
1,071,816	-				+0.2
1,071,931	+				+1.6
1,071,931	+				+1.8
1,071,931	+				+0.2
1,071,931	+				+2.1
1,071,932	-				-0.2
1,071,932	-				-0.7
1,071,932	-				-0.4
1,071,939	+				+0.6