Strain Fitness in Pseudomonas putida KT2440 around PP_0718

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0717 and PP_0718 are separated by 18 nucleotidesPP_0718 and PP_0719 are separated by 176 nucleotides PP_0717: PP_0717 - conserved membrane protein of unknown function, DUF2955 family, at 833,325 to 834,347 _0717 PP_0718: PP_0718 - Sulfate transporter, at 834,366 to 836,078 _0718 PP_0719: PP_0719 - ribosome-associated potassium-dependent informational ATP/GTPase, at 836,255 to 837,355 _0719 Position (kb) 834 835 836 837Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 833.579 kb on - strand, within PP_0717at 833.613 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.916 kb on + strand, within PP_0717at 833.916 kb on + strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 834.088 kb on + strand, within PP_0717at 834.123 kb on + strand, within PP_0717at 834.123 kb on + strand, within PP_0717at 834.124 kb on - strand, within PP_0717at 834.157 kb on - strand, within PP_0717at 834.189 kb on + strand, within PP_0717at 834.234 kb on + strand, within PP_0717at 834.234 kb on + strand, within PP_0717at 834.234 kb on + strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.255 kb on - strandat 834.255 kb on - strandat 834.283 kb on - strandat 834.400 kb on + strandat 834.400 kb on + strandat 834.400 kb on + strandat 834.401 kb on - strandat 834.449 kb on + strandat 834.449 kb on + strandat 834.449 kb on + strandat 834.450 kb on - strandat 834.581 kb on + strand, within PP_0718at 834.582 kb on - strand, within PP_0718at 834.750 kb on + strand, within PP_0718at 834.750 kb on + strand, within PP_0718at 834.751 kb on - strand, within PP_0718at 834.751 kb on - strand, within PP_0718at 834.796 kb on + strand, within PP_0718at 835.007 kb on + strand, within PP_0718at 835.008 kb on - strand, within PP_0718at 835.234 kb on + strand, within PP_0718at 835.235 kb on - strand, within PP_0718at 835.235 kb on - strand, within PP_0718at 835.296 kb on + strand, within PP_0718at 835.297 kb on - strand, within PP_0718at 835.297 kb on - strand, within PP_0718at 835.372 kb on - strand, within PP_0718at 835.534 kb on + strand, within PP_0718at 835.535 kb on - strand, within PP_0718at 835.535 kb on - strand, within PP_0718at 835.536 kb on + strand, within PP_0718at 835.536 kb on + strand, within PP_0718at 835.552 kb on + strand, within PP_0718at 835.552 kb on + strand, within PP_0718at 835.553 kb on - strand, within PP_0718at 835.623 kb on + strand, within PP_0718at 835.623 kb on + strand, within PP_0718at 835.623 kb on + strand, within PP_0718at 835.623 kb on + strand, within PP_0718at 835.624 kb on - strand, within PP_0718at 835.624 kb on - strand, within PP_0718at 835.648 kb on + strand, within PP_0718at 835.648 kb on + strand, within PP_0718at 835.648 kb on + strand, within PP_0718at 835.649 kb on - strand, within PP_0718at 835.649 kb on - strand, within PP_0718at 835.787 kb on - strand, within PP_0718at 835.787 kb on - strand, within PP_0718at 835.787 kb on - strand, within PP_0718at 835.870 kb on + strand, within PP_0718at 835.870 kb on + strand, within PP_0718at 835.893 kb on - strand, within PP_0718at 835.893 kb on - strand, within PP_0718at 835.897 kb on + strand, within PP_0718at 835.897 kb on + strand, within PP_0718at 835.898 kb on - strand, within PP_0718at 835.906 kb on + strand, within PP_0718at 835.906 kb on + strand, within PP_0718at 835.906 kb on + strand, within PP_0718at 835.906 kb on + strand, within PP_0718at 835.907 kb on - strandat 835.907 kb on - strandat 835.907 kb on - strandat 835.907 kb on - strandat 835.907 kb on - strandat 835.907 kb on - strandat 835.907 kb on - strandat 835.907 kb on - strandat 835.907 kb on - strandat 835.907 kb on - strandat 835.907 kb on - strandat 835.910 kb on + strandat 835.911 kb on - strandat 835.936 kb on + strandat 835.937 kb on - strandat 836.015 kb on - strandat 836.015 kb on - strandat 836.015 kb on - strandat 836.015 kb on - strandat 836.015 kb on - strandat 836.015 kb on - strandat 836.118 kb on + strandat 836.118 kb on + strandat 836.118 kb on + strandat 836.118 kb on + strandat 836.119 kb on - strandat 836.119 kb on - strandat 836.119 kb on - strandat 836.119 kb on - strandat 836.119 kb on - strandat 836.264 kb on - strandat 836.301 kb on + strandat 836.302 kb on - strandat 836.478 kb on - strand, within PP_0719at 836.502 kb on + strand, within PP_0719at 836.502 kb on + strand, within PP_0719at 836.739 kb on + strand, within PP_0719at 836.740 kb on - strand, within PP_0719at 836.916 kb on - strand, within PP_0719

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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833,579 - PP_0717 0.25 -1.7
833,613 + PP_0717 0.28 +1.5
833,774 + PP_0717 0.44 +1.5
833,774 + PP_0717 0.44 -2.2
833,774 + PP_0717 0.44 -0.2
833,774 + PP_0717 0.44 +0.2
833,774 + PP_0717 0.44 +0.1
833,774 + PP_0717 0.44 +0.4
833,774 + PP_0717 0.44 -1.1
833,774 + PP_0717 0.44 -2.7
833,775 - PP_0717 0.44 -0.4
833,775 - PP_0717 0.44 +0.5
833,775 - PP_0717 0.44 -0.9
833,775 - PP_0717 0.44 -0.8
833,775 - PP_0717 0.44 -0.0
833,775 - PP_0717 0.44 +0.3
833,916 + PP_0717 0.58 -1.0
833,916 + PP_0717 0.58 +0.2
833,917 - PP_0717 0.58 -0.4
833,917 - PP_0717 0.58 -0.3
833,917 - PP_0717 0.58 +0.5
833,917 - PP_0717 0.58 -0.6
834,088 + PP_0717 0.75 -0.4
834,123 + PP_0717 0.78 +0.8
834,123 + PP_0717 0.78 -0.6
834,124 - PP_0717 0.78 -0.1
834,157 - PP_0717 0.81 +0.7
834,189 + PP_0717 0.84 +0.5
834,234 + PP_0717 0.89 -0.1
834,234 + PP_0717 0.89 -0.0
834,234 + PP_0717 0.89 +1.4
834,235 - PP_0717 0.89 -0.3
834,235 - PP_0717 0.89 -1.2
834,235 - PP_0717 0.89 -0.7
834,235 - PP_0717 0.89 +0.8
834,255 - -0.5
834,255 - +0.4
834,283 - +0.4
834,400 + -2.3
834,400 + -1.9
834,400 + +0.9
834,401 - +0.1
834,449 + -1.9
834,449 + +1.2
834,449 + -0.2
834,450 - -2.4
834,581 + PP_0718 0.13 +2.0
834,582 - PP_0718 0.13 -0.1
834,750 + PP_0718 0.22 -1.4
834,750 + PP_0718 0.22 -0.7
834,751 - PP_0718 0.22 +0.1
834,751 - PP_0718 0.22 -2.5
834,796 + PP_0718 0.25 -0.5
835,007 + PP_0718 0.37 -0.4
835,008 - PP_0718 0.37 +0.9
835,234 + PP_0718 0.51 -0.6
835,235 - PP_0718 0.51 -2.2
835,235 - PP_0718 0.51 -0.2
835,296 + PP_0718 0.54 -0.7
835,297 - PP_0718 0.54 -1.5
835,297 - PP_0718 0.54 -0.9
835,372 - PP_0718 0.59 +0.3
835,534 + PP_0718 0.68 +0.3
835,535 - PP_0718 0.68 +0.8
835,535 - PP_0718 0.68 -2.0
835,536 + PP_0718 0.68 -0.3
835,536 + PP_0718 0.68 -2.3
835,552 + PP_0718 0.69 -0.3
835,552 + PP_0718 0.69 -1.0
835,553 - PP_0718 0.69 -0.3
835,623 + PP_0718 0.73 -0.8
835,623 + PP_0718 0.73 -1.5
835,623 + PP_0718 0.73 -0.2
835,623 + PP_0718 0.73 -1.0
835,624 - PP_0718 0.73 -0.3
835,624 - PP_0718 0.73 -1.2
835,648 + PP_0718 0.75 -0.5
835,648 + PP_0718 0.75 -0.5
835,648 + PP_0718 0.75 +0.7
835,649 - PP_0718 0.75 -0.4
835,649 - PP_0718 0.75 -0.4
835,787 - PP_0718 0.83 -1.9
835,787 - PP_0718 0.83 +0.0
835,787 - PP_0718 0.83 -1.0
835,870 + PP_0718 0.88 -1.7
835,870 + PP_0718 0.88 +0.7
835,893 - PP_0718 0.89 -0.9
835,893 - PP_0718 0.89 +0.1
835,897 + PP_0718 0.89 +0.3
835,897 + PP_0718 0.89 -0.6
835,898 - PP_0718 0.89 -1.6
835,906 + PP_0718 0.90 +0.1
835,906 + PP_0718 0.90 -1.5
835,906 + PP_0718 0.90 +0.7
835,906 + PP_0718 0.90 -0.7
835,907 - -1.6
835,907 - -0.8
835,907 - +0.1
835,907 - -0.1
835,907 - -1.2
835,907 - -0.5
835,907 - +0.4
835,907 - -2.4
835,907 - +0.3
835,907 - -1.0
835,907 - +0.3
835,910 + +1.7
835,911 - +0.3
835,936 + +0.9
835,937 - +0.7
836,015 - -1.2
836,015 - -1.0
836,015 - -0.6
836,015 - -0.2
836,015 - +1.1
836,015 - -0.5
836,118 + +0.2
836,118 + -0.5
836,118 + +2.7
836,118 + -2.4
836,119 - -0.0
836,119 - -2.0
836,119 - -0.1
836,119 - +0.3
836,119 - -0.1
836,264 - +0.6
836,301 + +0.5
836,302 - +0.6
836,478 - PP_0719 0.20 +0.2
836,502 + PP_0719 0.22 +0.1
836,502 + PP_0719 0.22 +1.6
836,739 + PP_0719 0.44 -0.7
836,740 - PP_0719 0.44 +4.3
836,916 - PP_0719 0.60 +1.6

Or see this region's nucleotide sequence