Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0676 and PP_0677 are separated by 67 nucleotides PP_0677 and PP_0678 are separated by 101 nucleotides PP_0678 and PP_0679 are separated by 71 nucleotides PP_0679 and PP_0680 are separated by 223 nucleotides
PP_0676: PP_0676 - putative Transcription elongation factor, at 790,172 to 790,669
_0676
PP_0677: PP_0677 - putative Lipoprotein, at 790,737 to 791,093
_0677
PP_0678: PP_0678 - conserved exported protein of unknown function, at 791,195 to 793,048
_0678
PP_0679: PP_0679 - conserved exported protein of unknown function, at 793,120 to 793,635
_0679
PP_0680: PP_0680 - ATP-dependent protease-like protein, at 793,859 to 796,297
_0680
Position (kb) 791
792
793
794 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 790.203 kb on - strand at 790.203 kb on - strand at 790.391 kb on + strand, within PP_0676 at 790.399 kb on + strand, within PP_0676 at 790.452 kb on + strand, within PP_0676 at 790.584 kb on + strand, within PP_0676 at 790.584 kb on + strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.671 kb on + strand at 790.671 kb on + strand at 790.671 kb on + strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.750 kb on + strand at 790.751 kb on - strand at 790.823 kb on - strand, within PP_0677 at 790.892 kb on - strand, within PP_0677 at 790.910 kb on - strand, within PP_0677 at 790.917 kb on + strand, within PP_0677 at 791.093 kb on + strand at 791.093 kb on + strand at 791.128 kb on + strand at 791.148 kb on - strand at 791.199 kb on + strand at 791.199 kb on + strand at 791.200 kb on - strand at 791.205 kb on + strand at 791.206 kb on - strand at 791.206 kb on - strand at 791.206 kb on - strand at 791.321 kb on + strand at 791.321 kb on + strand at 791.322 kb on - strand at 791.322 kb on - strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.353 kb on - strand at 791.353 kb on - strand at 791.691 kb on + strand, within PP_0678 at 791.691 kb on + strand, within PP_0678 at 791.745 kb on + strand, within PP_0678 at 791.745 kb on + strand, within PP_0678 at 791.745 kb on + strand, within PP_0678 at 791.770 kb on - strand, within PP_0678 at 791.770 kb on - strand, within PP_0678 at 791.770 kb on - strand, within PP_0678 at 791.787 kb on + strand, within PP_0678 at 791.788 kb on - strand, within PP_0678 at 791.796 kb on + strand, within PP_0678 at 792.072 kb on - strand, within PP_0678 at 792.279 kb on + strand, within PP_0678 at 792.280 kb on - strand, within PP_0678 at 792.349 kb on + strand, within PP_0678 at 792.350 kb on - strand, within PP_0678 at 792.417 kb on + strand, within PP_0678 at 792.417 kb on + strand, within PP_0678 at 792.492 kb on + strand, within PP_0678 at 792.518 kb on + strand, within PP_0678 at 792.522 kb on + strand, within PP_0678 at 792.523 kb on - strand at 792.523 kb on - strand, within PP_0678 at 792.523 kb on - strand, within PP_0678 at 792.523 kb on - strand, within PP_0678 at 792.543 kb on + strand, within PP_0678 at 792.543 kb on + strand, within PP_0678 at 792.544 kb on - strand, within PP_0678 at 792.544 kb on - strand, within PP_0678 at 792.633 kb on + strand, within PP_0678 at 792.633 kb on + strand, within PP_0678 at 792.633 kb on + strand, within PP_0678 at 792.767 kb on + strand, within PP_0678 at 792.768 kb on - strand, within PP_0678 at 792.768 kb on - strand, within PP_0678 at 792.807 kb on + strand, within PP_0678 at 792.807 kb on + strand, within PP_0678 at 792.807 kb on + strand, within PP_0678 at 792.808 kb on - strand at 792.808 kb on - strand, within PP_0678 at 792.808 kb on - strand, within PP_0678 at 792.891 kb on + strand at 792.891 kb on + strand at 792.891 kb on + strand at 792.891 kb on + strand at 792.892 kb on - strand at 792.892 kb on - strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.925 kb on - strand at 792.925 kb on - strand at 793.059 kb on + strand at 793.060 kb on - strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.122 kb on - strand at 793.132 kb on - strand at 793.136 kb on + strand at 793.136 kb on + strand at 793.136 kb on + strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.257 kb on - strand, within PP_0679 at 793.257 kb on - strand, within PP_0679 at 793.276 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.385 kb on + strand, within PP_0679 at 793.386 kb on - strand, within PP_0679 at 793.467 kb on + strand, within PP_0679 at 793.608 kb on + strand at 793.608 kb on + strand at 793.609 kb on - strand at 793.609 kb on - strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.778 kb on - strand at 793.778 kb on - strand at 793.778 kb on - strand at 793.830 kb on + strand at 793.831 kb on - strand at 793.831 kb on - strand at 793.847 kb on + strand at 793.847 kb on + strand at 793.939 kb on + strand at 794.037 kb on - strand at 794.045 kb on + strand at 794.045 kb on + strand at 794.045 kb on + strand at 794.046 kb on - strand at 794.046 kb on - strand at 794.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 790,203 - -1.4 790,203 - +1.8 790,391 + PP_0676 0.44 -0.1 790,399 + PP_0676 0.46 -1.8 790,452 + PP_0676 0.56 -1.0 790,584 + PP_0676 0.83 -0.8 790,584 + PP_0676 0.83 +0.3 790,585 - PP_0676 0.83 -1.6 790,585 - PP_0676 0.83 -0.5 790,585 - PP_0676 0.83 +1.8 790,585 - PP_0676 0.83 +0.7 790,585 - PP_0676 0.83 -1.9 790,671 + +0.6 790,671 + -0.4 790,671 + -1.5 790,672 - +0.4 790,672 - +0.1 790,672 - -0.2 790,672 - +0.2 790,672 - +1.6 790,672 - -0.6 790,750 + -0.0 790,751 - -0.5 790,823 - PP_0677 0.24 -0.4 790,892 - PP_0677 0.43 -1.4 790,910 - PP_0677 0.48 +0.0 790,917 + PP_0677 0.50 -1.2 791,093 + -0.1 791,093 + +0.6 791,128 + -1.0 791,148 - +0.9 791,199 + -0.7 791,199 + -1.1 791,200 - +0.5 791,205 + +1.0 791,206 - +0.6 791,206 - +1.7 791,206 - +0.1 791,321 + -0.2 791,321 + -1.9 791,322 - +0.1 791,322 - -0.2 791,352 + +0.6 791,352 + -0.5 791,352 + +0.1 791,353 - +1.3 791,353 - -2.4 791,691 + PP_0678 0.27 +1.1 791,691 + PP_0678 0.27 -0.2 791,745 + PP_0678 0.30 -0.4 791,745 + PP_0678 0.30 +0.4 791,745 + PP_0678 0.30 +0.9 791,770 - PP_0678 0.31 -2.4 791,770 - PP_0678 0.31 +0.1 791,770 - PP_0678 0.31 -0.6 791,787 + PP_0678 0.32 -0.9 791,788 - PP_0678 0.32 -2.4 791,796 + PP_0678 0.32 -0.8 792,072 - PP_0678 0.47 -0.5 792,279 + PP_0678 0.58 -1.2 792,280 - PP_0678 0.59 -2.0 792,349 + PP_0678 0.62 -0.8 792,350 - PP_0678 0.62 -1.3 792,417 + PP_0678 0.66 -1.5 792,417 + PP_0678 0.66 -0.7 792,492 + PP_0678 0.70 -0.7 792,518 + PP_0678 0.71 +0.3 792,522 + PP_0678 0.72 -0.5 792,523 - +0.8 792,523 - PP_0678 0.72 -0.9 792,523 - PP_0678 0.72 +0.0 792,523 - PP_0678 0.72 +0.3 792,543 + PP_0678 0.73 -1.5 792,543 + PP_0678 0.73 +1.5 792,544 - PP_0678 0.73 -0.1 792,544 - PP_0678 0.73 +1.4 792,633 + PP_0678 0.78 +1.3 792,633 + PP_0678 0.78 -0.7 792,633 + PP_0678 0.78 -2.6 792,767 + PP_0678 0.85 -0.6 792,768 - PP_0678 0.85 -0.4 792,768 - PP_0678 0.85 +1.4 792,807 + PP_0678 0.87 -0.0 792,807 + PP_0678 0.87 +1.0 792,807 + PP_0678 0.87 +2.8 792,808 - +1.3 792,808 - PP_0678 0.87 -0.5 792,808 - PP_0678 0.87 -1.1 792,891 + -0.7 792,891 + -0.0 792,891 + +0.7 792,891 + +0.1 792,892 - -1.2 792,892 - +0.7 792,924 + -0.9 792,924 + -0.9 792,925 - -2.3 792,925 - -1.0 793,059 + -0.4 793,060 - -0.6 793,121 + -0.3 793,121 + -1.1 793,121 + +1.3 793,121 + +0.6 793,122 - +0.7 793,132 - +0.9 793,136 + -0.9 793,136 + +1.2 793,136 + +0.2 793,137 - +1.0 793,137 - -2.7 793,137 - +1.2 793,137 - +0.8 793,137 - -0.7 793,257 - PP_0679 0.27 +0.6 793,257 - PP_0679 0.27 +0.6 793,276 + PP_0679 0.30 +1.6 793,295 + PP_0679 0.34 -1.8 793,295 + PP_0679 0.34 +0.8 793,295 + PP_0679 0.34 -2.7 793,295 + PP_0679 0.34 -1.5 793,296 - PP_0679 0.34 -0.9 793,296 - PP_0679 0.34 -1.4 793,296 - PP_0679 0.34 -0.4 793,296 - PP_0679 0.34 +0.5 793,296 - PP_0679 0.34 -0.0 793,385 + PP_0679 0.51 -0.6 793,386 - PP_0679 0.52 +0.1 793,467 + PP_0679 0.67 -1.9 793,608 + -1.9 793,608 + -0.8 793,609 - -2.3 793,609 - +1.6 793,777 + -1.7 793,777 + +1.0 793,777 + -2.0 793,777 + -2.5 793,778 - +0.4 793,778 - +0.3 793,778 - +0.9 793,830 + -1.6 793,831 - -1.5 793,831 - -0.3 793,847 + -1.1 793,847 + -0.2 793,939 + -1.0 794,037 - -1.8 794,045 + +0.8 794,045 + -1.4 794,045 + -0.4 794,046 - -0.3 794,046 - -0.8 794,046 - -1.9
Or see this region's nucleotide sequence