Strain Fitness in Pseudomonas putida KT2440 around PP_0647

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0646 and PP_0647 overlap by 8 nucleotidesPP_0647 and PP_0648 are separated by 191 nucleotidesPP_0648 and PP_0649 are separated by 87 nucleotides PP_0646: PP_0646 - conserved protein of unknown function, at 755,405 to 756,805 _0646 PP_0647: PP_0647 - conserved membrane protein of unknown function, at 756,798 to 757,187 _0647 PP_0648: PP_0648 - conserved protein of unknown function, at 757,379 to 757,834 _0648 PP_0649: PP_0649 - MutT/nudix family protein, at 757,922 to 758,332 _0649 Position (kb) 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 755.819 kb on + strand, within PP_0646at 755.819 kb on + strand, within PP_0646at 755.819 kb on + strand, within PP_0646at 755.819 kb on + strand, within PP_0646at 755.819 kb on + strand, within PP_0646at 755.820 kb on - strand, within PP_0646at 755.820 kb on - strand, within PP_0646at 755.820 kb on - strand, within PP_0646at 755.820 kb on - strand, within PP_0646at 755.820 kb on - strand, within PP_0646at 755.912 kb on - strand, within PP_0646at 755.979 kb on - strand, within PP_0646at 755.979 kb on - strand, within PP_0646at 756.046 kb on - strandat 756.081 kb on - strand, within PP_0646at 756.081 kb on - strand, within PP_0646at 756.107 kb on - strand, within PP_0646at 756.107 kb on - strand, within PP_0646at 756.107 kb on - strand, within PP_0646at 756.137 kb on - strand, within PP_0646at 756.235 kb on + strand, within PP_0646at 756.235 kb on + strand, within PP_0646at 756.235 kb on + strand, within PP_0646at 756.236 kb on - strand, within PP_0646at 756.236 kb on - strand, within PP_0646at 756.279 kb on + strand, within PP_0646at 756.279 kb on + strand, within PP_0646at 756.280 kb on - strand, within PP_0646at 756.280 kb on - strand, within PP_0646at 756.310 kb on + strand, within PP_0646at 756.311 kb on - strand, within PP_0646at 756.311 kb on - strand, within PP_0646at 756.311 kb on - strand, within PP_0646at 756.311 kb on - strand, within PP_0646at 756.333 kb on - strand, within PP_0646at 756.358 kb on + strand, within PP_0646at 756.431 kb on + strand, within PP_0646at 756.431 kb on + strand, within PP_0646at 756.431 kb on + strand, within PP_0646at 756.431 kb on + strand, within PP_0646at 756.432 kb on - strand, within PP_0646at 756.432 kb on - strand, within PP_0646at 756.432 kb on - strand, within PP_0646at 756.432 kb on - strand, within PP_0646at 756.432 kb on - strand, within PP_0646at 756.454 kb on + strand, within PP_0646at 756.455 kb on - strand, within PP_0646at 756.457 kb on + strand, within PP_0646at 756.457 kb on + strand, within PP_0646at 756.457 kb on + strand, within PP_0646at 756.457 kb on + strand, within PP_0646at 756.458 kb on - strand, within PP_0646at 756.458 kb on - strand, within PP_0646at 756.458 kb on - strand, within PP_0646at 756.458 kb on - strand, within PP_0646at 756.458 kb on - strand, within PP_0646at 756.458 kb on - strand, within PP_0646at 756.461 kb on + strand, within PP_0646at 756.461 kb on + strand, within PP_0646at 756.462 kb on - strand, within PP_0646at 756.462 kb on - strand, within PP_0646at 756.495 kb on + strand, within PP_0646at 756.502 kb on + strand, within PP_0646at 756.502 kb on + strand, within PP_0646at 756.502 kb on + strand, within PP_0646at 756.502 kb on + strand, within PP_0646at 756.503 kb on - strand, within PP_0646at 756.503 kb on - strand, within PP_0646at 756.503 kb on - strand, within PP_0646at 756.512 kb on + strand, within PP_0646at 756.512 kb on + strand, within PP_0646at 756.654 kb on + strand, within PP_0646at 756.654 kb on + strand, within PP_0646at 756.654 kb on + strand, within PP_0646at 756.654 kb on + strand, within PP_0646at 756.655 kb on - strand, within PP_0646at 756.655 kb on - strand, within PP_0646at 756.655 kb on - strand, within PP_0646at 756.655 kb on - strand, within PP_0646at 756.655 kb on - strand, within PP_0646at 756.677 kb on - strandat 756.699 kb on + strandat 756.699 kb on + strandat 756.700 kb on - strandat 756.700 kb on - strandat 756.785 kb on + strandat 756.785 kb on + strandat 756.785 kb on + strandat 756.786 kb on - strandat 756.797 kb on + strandat 756.797 kb on + strandat 756.797 kb on + strandat 757.027 kb on + strand, within PP_0647at 757.045 kb on + strand, within PP_0647at 757.045 kb on + strand, within PP_0647at 757.045 kb on + strand, within PP_0647at 757.045 kb on + strand, within PP_0647at 757.045 kb on + strand, within PP_0647at 757.045 kb on + strand, within PP_0647at 757.045 kb on + strand, within PP_0647at 757.045 kb on + strand, within PP_0647at 757.046 kb on - strand, within PP_0647at 757.046 kb on - strand, within PP_0647at 757.049 kb on + strand, within PP_0647at 757.049 kb on + strand, within PP_0647at 757.049 kb on + strand, within PP_0647at 757.050 kb on - strand, within PP_0647at 757.050 kb on - strand, within PP_0647at 757.050 kb on - strand, within PP_0647at 757.050 kb on - strand, within PP_0647at 757.114 kb on + strand, within PP_0647at 757.120 kb on + strand, within PP_0647at 757.121 kb on - strand, within PP_0647at 757.167 kb on + strandat 757.167 kb on + strandat 757.167 kb on + strandat 757.167 kb on + strandat 757.167 kb on + strandat 757.167 kb on + strandat 757.168 kb on - strandat 757.168 kb on - strandat 757.168 kb on - strandat 757.168 kb on - strandat 757.172 kb on - strandat 757.172 kb on - strandat 757.172 kb on - strandat 757.209 kb on + strandat 757.209 kb on + strandat 757.209 kb on + strandat 757.210 kb on - strandat 757.210 kb on - strandat 757.261 kb on - strandat 757.261 kb on - strandat 757.301 kb on - strandat 757.301 kb on - strandat 757.301 kb on - strandat 757.311 kb on + strandat 757.316 kb on + strandat 757.317 kb on - strandat 757.320 kb on + strandat 757.320 kb on + strandat 757.321 kb on - strandat 757.379 kb on - strandat 757.412 kb on + strandat 757.440 kb on + strand, within PP_0648at 757.539 kb on + strand, within PP_0648at 757.540 kb on - strand, within PP_0648at 757.594 kb on + strand, within PP_0648at 757.595 kb on - strand, within PP_0648at 757.606 kb on + strand, within PP_0648at 757.606 kb on + strand, within PP_0648at 757.607 kb on - strand, within PP_0648at 757.607 kb on - strand, within PP_0648at 757.607 kb on - strand, within PP_0648at 757.607 kb on - strand, within PP_0648at 757.614 kb on - strand, within PP_0648at 757.614 kb on - strand, within PP_0648at 757.614 kb on - strand, within PP_0648at 757.633 kb on + strand, within PP_0648at 757.634 kb on - strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.639 kb on + strand, within PP_0648at 757.639 kb on + strand, within PP_0648at 757.640 kb on - strand, within PP_0648at 757.640 kb on - strand, within PP_0648at 757.641 kb on - strand, within PP_0648at 757.673 kb on + strand, within PP_0648at 757.674 kb on - strand, within PP_0648at 757.674 kb on - strand, within PP_0648at 757.693 kb on + strand, within PP_0648at 757.756 kb on + strand, within PP_0648at 757.756 kb on + strand, within PP_0648at 757.757 kb on - strand, within PP_0648at 757.757 kb on - strand, within PP_0648at 757.767 kb on + strand, within PP_0648at 757.767 kb on + strand, within PP_0648at 757.803 kb on - strandat 757.838 kb on + strandat 757.880 kb on + strandat 757.880 kb on + strandat 757.880 kb on + strandat 757.900 kb on + strandat 757.900 kb on + strandat 757.900 kb on + strandat 757.947 kb on + strandat 757.947 kb on + strandat 757.948 kb on - strandat 757.948 kb on - strandat 757.948 kb on - strandat 757.948 kb on - strandat 757.948 kb on - strandat 757.980 kb on + strand, within PP_0649at 757.998 kb on + strand, within PP_0649at 757.998 kb on + strand, within PP_0649at 757.999 kb on - strand, within PP_0649at 758.087 kb on - strand, within PP_0649at 758.087 kb on - strand, within PP_0649

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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755,819 + PP_0646 0.30 -0.7
755,819 + PP_0646 0.30 +0.6
755,819 + PP_0646 0.30 -1.2
755,819 + PP_0646 0.30 -0.8
755,819 + PP_0646 0.30 +0.3
755,820 - PP_0646 0.30 +1.4
755,820 - PP_0646 0.30 -0.7
755,820 - PP_0646 0.30 +0.5
755,820 - PP_0646 0.30 +0.1
755,820 - PP_0646 0.30 +0.6
755,912 - PP_0646 0.36 +0.2
755,979 - PP_0646 0.41 +1.1
755,979 - PP_0646 0.41 -0.1
756,046 - +1.1
756,081 - PP_0646 0.48 -2.3
756,081 - PP_0646 0.48 -1.0
756,107 - PP_0646 0.50 +0.2
756,107 - PP_0646 0.50 +0.8
756,107 - PP_0646 0.50 +0.0
756,137 - PP_0646 0.52 -0.8
756,235 + PP_0646 0.59 -0.9
756,235 + PP_0646 0.59 +0.5
756,235 + PP_0646 0.59 -0.7
756,236 - PP_0646 0.59 +1.2
756,236 - PP_0646 0.59 -0.7
756,279 + PP_0646 0.62 +0.4
756,279 + PP_0646 0.62 +0.4
756,280 - PP_0646 0.62 -1.7
756,280 - PP_0646 0.62 +0.3
756,310 + PP_0646 0.65 -0.2
756,311 - PP_0646 0.65 +1.2
756,311 - PP_0646 0.65 +1.0
756,311 - PP_0646 0.65 +1.0
756,311 - PP_0646 0.65 +1.0
756,333 - PP_0646 0.66 -1.0
756,358 + PP_0646 0.68 -2.9
756,431 + PP_0646 0.73 +0.6
756,431 + PP_0646 0.73 -1.9
756,431 + PP_0646 0.73 +0.5
756,431 + PP_0646 0.73 -1.1
756,432 - PP_0646 0.73 +0.7
756,432 - PP_0646 0.73 -0.6
756,432 - PP_0646 0.73 +0.8
756,432 - PP_0646 0.73 -0.5
756,432 - PP_0646 0.73 +1.2
756,454 + PP_0646 0.75 +1.1
756,455 - PP_0646 0.75 +0.2
756,457 + PP_0646 0.75 -1.3
756,457 + PP_0646 0.75 +0.2
756,457 + PP_0646 0.75 -1.2
756,457 + PP_0646 0.75 +0.7
756,458 - PP_0646 0.75 +0.4
756,458 - PP_0646 0.75 +0.4
756,458 - PP_0646 0.75 -0.8
756,458 - PP_0646 0.75 +0.2
756,458 - PP_0646 0.75 -0.5
756,458 - PP_0646 0.75 -0.2
756,461 + PP_0646 0.75 +1.8
756,461 + PP_0646 0.75 -0.8
756,462 - PP_0646 0.75 -0.6
756,462 - PP_0646 0.75 -0.3
756,495 + PP_0646 0.78 +1.2
756,502 + PP_0646 0.78 +1.0
756,502 + PP_0646 0.78 -0.3
756,502 + PP_0646 0.78 -1.6
756,502 + PP_0646 0.78 +1.1
756,503 - PP_0646 0.78 -1.4
756,503 - PP_0646 0.78 -1.6
756,503 - PP_0646 0.78 +0.7
756,512 + PP_0646 0.79 -0.4
756,512 + PP_0646 0.79 -1.2
756,654 + PP_0646 0.89 -1.3
756,654 + PP_0646 0.89 -1.1
756,654 + PP_0646 0.89 -1.2
756,654 + PP_0646 0.89 -1.6
756,655 - PP_0646 0.89 +0.3
756,655 - PP_0646 0.89 +1.5
756,655 - PP_0646 0.89 +0.5
756,655 - PP_0646 0.89 +0.9
756,655 - PP_0646 0.89 -2.8
756,677 - +1.1
756,699 + +1.7
756,699 + -0.1
756,700 - +0.3
756,700 - -0.5
756,785 + +0.3
756,785 + -0.2
756,785 + -1.3
756,786 - -0.7
756,797 + -1.1
756,797 + +1.4
756,797 + +0.3
757,027 + PP_0647 0.59 -0.7
757,045 + PP_0647 0.63 +0.8
757,045 + PP_0647 0.63 -0.7
757,045 + PP_0647 0.63 -0.0
757,045 + PP_0647 0.63 -2.4
757,045 + PP_0647 0.63 -0.2
757,045 + PP_0647 0.63 -1.2
757,045 + PP_0647 0.63 -2.6
757,045 + PP_0647 0.63 -2.5
757,046 - PP_0647 0.64 +0.4
757,046 - PP_0647 0.64 -0.7
757,049 + PP_0647 0.64 -0.3
757,049 + PP_0647 0.64 -2.0
757,049 + PP_0647 0.64 -0.7
757,050 - PP_0647 0.65 +0.7
757,050 - PP_0647 0.65 +0.9
757,050 - PP_0647 0.65 -0.9
757,050 - PP_0647 0.65 +1.5
757,114 + PP_0647 0.81 -2.3
757,120 + PP_0647 0.83 -1.1
757,121 - PP_0647 0.83 -0.4
757,167 + +0.9
757,167 + -2.3
757,167 + +0.5
757,167 + -0.6
757,167 + +0.3
757,167 + -2.1
757,168 - -1.2
757,168 - +0.7
757,168 - +1.0
757,168 - -1.5
757,172 - -0.3
757,172 - +0.4
757,172 - +0.6
757,209 + -1.7
757,209 + -0.6
757,209 + +0.7
757,210 - -0.4
757,210 - -1.8
757,261 - -1.2
757,261 - +0.7
757,301 - -0.5
757,301 - +1.7
757,301 - -1.6
757,311 + +0.9
757,316 + -0.0
757,317 - -1.6
757,320 + -1.0
757,320 + +0.3
757,321 - +1.1
757,379 - +0.9
757,412 + +0.6
757,440 + PP_0648 0.13 -0.5
757,539 + PP_0648 0.35 +0.1
757,540 - PP_0648 0.35 -0.7
757,594 + PP_0648 0.47 -0.4
757,595 - PP_0648 0.47 -0.6
757,606 + PP_0648 0.50 -0.2
757,606 + PP_0648 0.50 +0.6
757,607 - PP_0648 0.50 -0.5
757,607 - PP_0648 0.50 +1.0
757,607 - PP_0648 0.50 +0.5
757,607 - PP_0648 0.50 -0.6
757,614 - PP_0648 0.52 +0.7
757,614 - PP_0648 0.52 +0.7
757,614 - PP_0648 0.52 -0.1
757,633 + PP_0648 0.56 +0.0
757,634 - PP_0648 0.56 -1.0
757,637 + PP_0648 0.57 -0.3
757,637 + PP_0648 0.57 +0.5
757,637 + PP_0648 0.57 +0.4
757,637 + PP_0648 0.57 +0.7
757,637 + PP_0648 0.57 -1.4
757,637 + PP_0648 0.57 +1.0
757,637 + PP_0648 0.57 -0.3
757,638 - PP_0648 0.57 -0.6
757,638 - PP_0648 0.57 -1.2
757,638 - PP_0648 0.57 +0.1
757,638 - PP_0648 0.57 -0.1
757,638 - PP_0648 0.57 -2.0
757,638 - PP_0648 0.57 -0.6
757,638 - PP_0648 0.57 -0.1
757,638 - PP_0648 0.57 -3.0
757,638 - PP_0648 0.57 -0.4
757,639 + PP_0648 0.57 +0.4
757,639 + PP_0648 0.57 +0.3
757,640 - PP_0648 0.57 +0.2
757,640 - PP_0648 0.57 +0.2
757,641 - PP_0648 0.57 -0.6
757,673 + PP_0648 0.64 +0.5
757,674 - PP_0648 0.65 -0.4
757,674 - PP_0648 0.65 +0.2
757,693 + PP_0648 0.69 +1.4
757,756 + PP_0648 0.83 -0.8
757,756 + PP_0648 0.83 +0.7
757,757 - PP_0648 0.83 +0.6
757,757 - PP_0648 0.83 +0.0
757,767 + PP_0648 0.85 +0.4
757,767 + PP_0648 0.85 +0.3
757,803 - +0.8
757,838 + +2.6
757,880 + +0.2
757,880 + +1.0
757,880 + +2.1
757,900 + +0.6
757,900 + +0.7
757,900 + +0.1
757,947 + -0.2
757,947 + -2.0
757,948 - -0.7
757,948 - -0.7
757,948 - +1.2
757,948 - +2.0
757,948 - -0.9
757,980 + PP_0649 0.14 -1.0
757,998 + PP_0649 0.18 +0.5
757,998 + PP_0649 0.18 -2.0
757,999 - PP_0649 0.19 -1.2
758,087 - PP_0649 0.40 -0.6
758,087 - PP_0649 0.40 +0.5

Or see this region's nucleotide sequence