Strain Fitness in Pseudomonas putida KT2440 around PP_0641

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
751,476	-		PP_5450	0.78	-1.0
751,480	-		PP_5450	0.79	+0.9
751,480	-		PP_5450	0.79	-0.3
751,480	-		PP_5450	0.79	-1.0
751,489	-		PP_5450	0.80	+0.8
751,513	+		PP_5450	0.84	+0.9
751,555	+				+0.6
751,556	-				-0.6
751,556	-				+0.3
751,556	-				+1.9
751,580	+				-0.6
751,609	-				-0.2
751,609	-				-0.4
751,621	+				-0.2
751,622	-				-1.4
751,647	+				-0.4
751,647	+				+1.4
751,648	-				-1.0
751,648	-				-1.0
751,752	-				-1.4
751,770	+				-1.8
751,770	+				+0.6
751,771	-				-0.8
751,771	-				-1.1
751,797	-				-1.8
751,829	+				-0.6
751,830	-				-0.0
751,903	-				-0.1
751,903	-				+0.5
751,911	+				+0.5
751,911	+				-0.8
751,912	-				-0.5
751,912	-				-0.2
751,912	-				+0.2
751,912	-				+0.1
751,912	-				+1.0
751,912	-				+0.4
751,916	-				+0.9
751,916	-				+0.3
751,916	-				+1.0
751,916	-				-0.3
751,916	-				-0.1
751,925	-				+0.6
751,925	-				+1.8
751,927	+				-0.3
751,927	+				-0.7
751,927	+				+0.1
751,928	-				+0.7
751,928	-				-1.4
751,928	-				+1.7
751,928	-				-0.8
751,928	-				-0.5
751,992	-				+0.1
751,992	-				+0.0
751,992	-				+0.1
752,006	+				-0.5
752,089	+		PP_5451	0.35	+1.1
752,090	-		PP_5451	0.36	-1.2
752,090	-		PP_5451	0.36	+0.0
752,090	-		PP_5451	0.36	+0.1
752,127	-		PP_5451	0.48	+0.2
752,173	+		PP_5451	0.63	+1.3
752,174	-		PP_5451	0.63	-0.0
752,264	+				-2.0
752,284	+				+0.6
752,352	-				-1.9
752,427	+				-0.6
752,484	+				-0.8
752,484	+				+0.0
752,484	+				+0.5
752,484	+				+0.8
752,484	+				-0.3
752,485	-				-1.7
752,485	-				+0.6
752,485	-				+0.1
752,485	-				-0.3
752,485	-				+0.2
752,487	+		PP_0641	0.10	+0.5
752,487	+		PP_0641	0.10	-0.6
752,487	+		PP_0641	0.10	+0.3
752,487	+		PP_0641	0.10	-1.4
752,487	+		PP_0641	0.10	-0.2
752,488	-		PP_0641	0.10	-0.8
752,488	-		PP_0641	0.10	-1.6
752,488	-		PP_0641	0.10	-2.1
752,488	-		PP_0641	0.10	+0.3
752,488	-		PP_0641	0.10	-2.0
752,488	-		PP_0641	0.10	-0.8
752,550	+		PP_0641	0.31	-0.1
752,551	-		PP_0641	0.31	+0.4
752,551	-		PP_0641	0.31	-0.2
752,551	-		PP_0641	0.31	-0.0
752,551	-		PP_0641	0.31	+0.6
752,551	-		PP_0641	0.31	+0.3
752,628	-		PP_0641	0.56	-1.3
752,700	+		PP_0641	0.80	+0.1
752,700	+		PP_0641	0.80	+0.8
752,701	-		PP_0641	0.80	-1.6
752,701	-		PP_0641	0.80	-1.3
752,701	-				+1.0
752,701	-		PP_0641	0.80	-0.3
752,701	-		PP_0641	0.80	-0.6
752,745	-				+0.5
752,849	+				-0.5
752,850	-				+0.5
752,850	-				+1.6
752,942	+				+1.0
752,976	+				+0.1
752,976	+				-1.1
752,977	-				-2.1
752,977	-				-0.3
753,005	+				+0.4
753,005	+				-2.6
753,005	+				+1.2
753,006	-				+0.6
753,009	+				-1.1
753,009	+				-0.0
753,071	+				-2.2
753,071	+				-0.3
753,072	-				-0.8
753,206	+				-0.6
753,207	-				+0.0
753,207	-				+1.1
753,207	-				-1.3
753,216	-				-0.2
753,222	+				-1.1
753,223	-				-2.6
753,228	-				-0.8
753,231	+				-0.1
753,231	+				+0.0
753,231	+				-0.2
753,232	-				+0.0
753,238	+				-0.6
753,239	-				-0.5
753,241	+				-0.5
753,241	+				-0.8
753,251	+				-0.8
753,409	+				-0.2
753,436	+				-0.5
753,436	+				-1.3
753,437	-				+1.1
753,437	-				+0.2
753,437	-				-0.4
753,440	+				-0.5
753,440	+				+0.2
753,440	+				-2.8
753,441	-				+1.5
753,465	+				+0.5
753,466	-				-0.5
753,518	-				+0.6
753,624	-				-0.9
753,759	+				-1.6