Strain Fitness in Pseudomonas putida KT2440 around PP_0618

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0617 and PP_0618 are separated by 1 nucleotidesPP_0618 and PP_0619 are separated by 65 nucleotides PP_0617: PP_0617 - Branched-chain amino acid ABC transporter, permease protein, at 722,749 to 723,768 _0617 PP_0618: PP_0618 - Branched-chain amino acid ABC transporter, permease protein, at 723,770 to 724,630 _0618 PP_0619: PP_0619 - Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, at 724,696 to 725,898 _0619 Position (kb) 723 724 725Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 723.065 kb on + strand, within PP_0617at 723.066 kb on - strand, within PP_0617at 723.066 kb on - strand, within PP_0617at 723.066 kb on - strand, within PP_0617at 723.066 kb on - strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.261 kb on - strand, within PP_0617at 723.261 kb on - strand, within PP_0617at 723.261 kb on - strand, within PP_0617at 723.290 kb on - strand, within PP_0617at 723.290 kb on - strand, within PP_0617at 723.369 kb on + strand, within PP_0617at 723.369 kb on + strand, within PP_0617at 723.370 kb on - strand, within PP_0617at 723.370 kb on - strand, within PP_0617at 723.371 kb on + strand, within PP_0617at 723.372 kb on - strand, within PP_0617at 723.372 kb on - strand, within PP_0617at 723.372 kb on - strand, within PP_0617at 723.372 kb on - strand, within PP_0617at 723.383 kb on + strand, within PP_0617at 723.383 kb on + strand, within PP_0617at 723.383 kb on + strand, within PP_0617at 723.422 kb on + strand, within PP_0617at 723.422 kb on + strand, within PP_0617at 723.422 kb on + strand, within PP_0617at 723.422 kb on + strand, within PP_0617at 723.423 kb on - strand, within PP_0617at 723.423 kb on - strand, within PP_0617at 723.423 kb on - strand, within PP_0617at 723.423 kb on - strand, within PP_0617at 723.423 kb on - strand, within PP_0617at 723.599 kb on + strand, within PP_0617at 723.706 kb on + strandat 723.706 kb on + strandat 723.707 kb on - strandat 723.828 kb on + strandat 723.828 kb on + strandat 723.829 kb on - strandat 724.010 kb on + strand, within PP_0618at 724.011 kb on - strand, within PP_0618at 724.011 kb on - strand, within PP_0618at 724.210 kb on - strand, within PP_0618at 724.212 kb on + strand, within PP_0618at 724.212 kb on + strand, within PP_0618at 724.212 kb on + strand, within PP_0618at 724.213 kb on - strand, within PP_0618at 724.218 kb on + strand, within PP_0618at 724.218 kb on + strand, within PP_0618at 724.219 kb on - strand, within PP_0618at 724.219 kb on - strand, within PP_0618at 724.235 kb on + strand, within PP_0618at 724.368 kb on + strand, within PP_0618at 724.369 kb on - strand, within PP_0618at 724.369 kb on - strand, within PP_0618at 724.369 kb on - strand, within PP_0618at 724.476 kb on + strand, within PP_0618at 724.486 kb on - strand, within PP_0618at 724.486 kb on - strand, within PP_0618at 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.576 kb on - strandat 724.576 kb on - strandat 724.576 kb on - strandat 724.618 kb on - strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.668 kb on - strandat 724.668 kb on - strandat 724.668 kb on - strandat 724.811 kb on + strandat 724.812 kb on - strandat 724.812 kb on - strandat 724.812 kb on - strandat 724.814 kb on + strandat 724.814 kb on + strandat 724.815 kb on - strandat 724.815 kb on - strandat 724.982 kb on + strand, within PP_0619at 724.982 kb on + strand, within PP_0619at 724.983 kb on - strand, within PP_0619at 725.000 kb on + strand, within PP_0619at 725.000 kb on + strand, within PP_0619at 725.000 kb on + strand, within PP_0619at 725.000 kb on + strand, within PP_0619at 725.060 kb on + strand, within PP_0619at 725.075 kb on + strand, within PP_0619at 725.075 kb on + strand, within PP_0619at 725.294 kb on + strand, within PP_0619at 725.295 kb on - strand, within PP_0619at 725.368 kb on + strand, within PP_0619at 725.368 kb on + strand, within PP_0619at 725.368 kb on + strand, within PP_0619at 725.368 kb on + strand, within PP_0619at 725.368 kb on + strand, within PP_0619at 725.368 kb on + strand, within PP_0619at 725.369 kb on - strand, within PP_0619at 725.369 kb on - strand, within PP_0619at 725.372 kb on + strand, within PP_0619at 725.372 kb on + strand, within PP_0619at 725.373 kb on - strand, within PP_0619at 725.390 kb on + strand, within PP_0619at 725.391 kb on - strand, within PP_0619at 725.391 kb on - strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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723,065 + PP_0617 0.31 +0.6
723,066 - PP_0617 0.31 -0.6
723,066 - PP_0617 0.31 -0.8
723,066 - PP_0617 0.31 -0.1
723,066 - PP_0617 0.31 -0.1
723,260 + PP_0617 0.50 +1.7
723,260 + PP_0617 0.50 +0.5
723,260 + PP_0617 0.50 -0.9
723,260 + PP_0617 0.50 -1.4
723,260 + PP_0617 0.50 +1.0
723,260 + PP_0617 0.50 +0.3
723,260 + PP_0617 0.50 +0.9
723,260 + PP_0617 0.50 -0.7
723,260 + PP_0617 0.50 +1.4
723,261 - PP_0617 0.50 +0.1
723,261 - PP_0617 0.50 -3.3
723,261 - PP_0617 0.50 -1.7
723,290 - PP_0617 0.53 -0.3
723,290 - PP_0617 0.53 -1.1
723,369 + PP_0617 0.61 +2.4
723,369 + PP_0617 0.61 -0.4
723,370 - PP_0617 0.61 +0.6
723,370 - PP_0617 0.61 -1.8
723,371 + PP_0617 0.61 -2.1
723,372 - PP_0617 0.61 -0.7
723,372 - PP_0617 0.61 -1.1
723,372 - PP_0617 0.61 -3.0
723,372 - PP_0617 0.61 +0.5
723,383 + PP_0617 0.62 -0.1
723,383 + PP_0617 0.62 +0.5
723,383 + PP_0617 0.62 -0.8
723,422 + PP_0617 0.66 +0.8
723,422 + PP_0617 0.66 -0.3
723,422 + PP_0617 0.66 -1.5
723,422 + PP_0617 0.66 -0.0
723,423 - PP_0617 0.66 +0.5
723,423 - PP_0617 0.66 +0.1
723,423 - PP_0617 0.66 -0.5
723,423 - PP_0617 0.66 +1.7
723,423 - PP_0617 0.66 +2.1
723,599 + PP_0617 0.83 -0.7
723,706 + -0.6
723,706 + -1.3
723,707 - +0.6
723,828 + -0.7
723,828 + -0.3
723,829 - +0.3
724,010 + PP_0618 0.28 -0.3
724,011 - PP_0618 0.28 -1.2
724,011 - PP_0618 0.28 +0.6
724,210 - PP_0618 0.51 -0.8
724,212 + PP_0618 0.51 -1.1
724,212 + PP_0618 0.51 +0.6
724,212 + PP_0618 0.51 -0.7
724,213 - PP_0618 0.51 -1.8
724,218 + PP_0618 0.52 -1.8
724,218 + PP_0618 0.52 -2.8
724,219 - PP_0618 0.52 +0.4
724,219 - PP_0618 0.52 +1.9
724,235 + PP_0618 0.54 -0.4
724,368 + PP_0618 0.69 -1.5
724,369 - PP_0618 0.70 -1.8
724,369 - PP_0618 0.70 -0.1
724,369 - PP_0618 0.70 -0.8
724,476 + PP_0618 0.82 +0.2
724,486 - PP_0618 0.83 -2.1
724,486 - PP_0618 0.83 -1.5
724,575 + -1.2
724,575 + +0.4
724,575 + +0.9
724,575 + -0.4
724,575 + +0.5
724,575 + -0.3
724,576 - -0.6
724,576 - -0.9
724,576 - -1.1
724,618 - +0.6
724,667 + -1.5
724,667 + +1.6
724,667 + -0.2
724,667 + +0.4
724,667 + -0.4
724,667 + -0.7
724,668 - -0.6
724,668 - +0.9
724,668 - -0.3
724,811 + -0.7
724,812 - -0.2
724,812 - -0.1
724,812 - -1.6
724,814 + -0.9
724,814 + -0.9
724,815 - -0.3
724,815 - -1.2
724,982 + PP_0619 0.24 -0.0
724,982 + PP_0619 0.24 +0.7
724,983 - PP_0619 0.24 -0.5
725,000 + PP_0619 0.25 -0.1
725,000 + PP_0619 0.25 -1.9
725,000 + PP_0619 0.25 +1.5
725,000 + PP_0619 0.25 -1.5
725,060 + PP_0619 0.30 +0.2
725,075 + PP_0619 0.32 +0.8
725,075 + PP_0619 0.32 -0.2
725,294 + PP_0619 0.50 +0.4
725,295 - PP_0619 0.50 +1.6
725,368 + PP_0619 0.56 -0.3
725,368 + PP_0619 0.56 +1.3
725,368 + PP_0619 0.56 +0.5
725,368 + PP_0619 0.56 -0.6
725,368 + PP_0619 0.56 +0.8
725,368 + PP_0619 0.56 +1.3
725,369 - PP_0619 0.56 -0.4
725,369 - PP_0619 0.56 -1.4
725,372 + PP_0619 0.56 -0.3
725,372 + PP_0619 0.56 +0.9
725,373 - PP_0619 0.56 -0.2
725,390 + PP_0619 0.58 +0.7
725,391 - PP_0619 0.58 -0.6
725,391 - PP_0619 0.58 -0.9
725,453 + PP_0619 0.63 -0.3
725,453 + PP_0619 0.63 +0.2
725,453 + PP_0619 0.63 -1.2
725,453 + PP_0619 0.63 -2.0
725,453 + PP_0619 0.63 +1.0
725,453 + PP_0619 0.63 -0.2
725,453 + PP_0619 0.63 -1.8
725,454 - PP_0619 0.63 +1.5
725,454 - PP_0619 0.63 +0.6
725,454 - PP_0619 0.63 -2.1
725,454 - PP_0619 0.63 -0.5
725,454 - PP_0619 0.63 +1.5
725,454 - PP_0619 0.63 -0.1
725,454 - PP_0619 0.63 -2.3

Or see this region's nucleotide sequence