Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0564 and PP_0565 are separated by 2 nucleotides PP_0565 and PP_0566 are separated by 239 nucleotides PP_0566 and PP_0567 are separated by 150 nucleotides
PP_0564: PP_0564 - conserved protein of unknown function, at 656,569 to 657,657
_0564
PP_0565: PP_0565 - putative enzyme, at 657,660 to 658,193
_0565
PP_0566: PP_0566 - translation-related factor, at 658,433 to 658,804
_0566
PP_0567: PP_0567 - Biosynthetic arginine decarboxylase, at 658,955 to 660,868
_0567
Position (kb) 657
658
659 Strain fitness (log2 ratio) -2
-1
0
1 at 656.668 kb on + strand at 656.668 kb on + strand at 656.669 kb on - strand at 656.808 kb on + strand, within PP_0564 at 656.808 kb on + strand, within PP_0564 at 656.809 kb on - strand, within PP_0564 at 656.833 kb on + strand, within PP_0564 at 656.833 kb on + strand, within PP_0564 at 656.834 kb on - strand, within PP_0564 at 656.835 kb on + strand, within PP_0564 at 656.835 kb on + strand, within PP_0564 at 656.835 kb on + strand, within PP_0564 at 656.835 kb on + strand, within PP_0564 at 656.835 kb on + strand, within PP_0564 at 656.836 kb on - strand, within PP_0564 at 656.836 kb on - strand, within PP_0564 at 656.836 kb on - strand, within PP_0564 at 656.836 kb on - strand, within PP_0564 at 656.836 kb on - strand, within PP_0564 at 656.953 kb on + strand, within PP_0564 at 656.954 kb on - strand, within PP_0564 at 656.997 kb on + strand, within PP_0564 at 657.177 kb on + strand, within PP_0564 at 657.178 kb on - strand, within PP_0564 at 657.184 kb on + strand, within PP_0564 at 657.185 kb on - strand, within PP_0564 at 657.187 kb on - strand, within PP_0564 at 657.386 kb on - strand, within PP_0564 at 657.599 kb on - strand at 657.665 kb on + strand at 657.665 kb on + strand at 657.743 kb on - strand, within PP_0565 at 657.838 kb on + strand, within PP_0565 at 657.848 kb on + strand, within PP_0565 at 657.876 kb on + strand, within PP_0565 at 658.000 kb on - strand, within PP_0565 at 658.039 kb on - strand, within PP_0565 at 658.086 kb on - strand, within PP_0565 at 658.143 kb on + strand at 658.144 kb on - strand at 658.144 kb on - strand at 658.176 kb on + strand at 658.176 kb on + strand at 658.176 kb on + strand at 658.192 kb on - strand at 658.192 kb on - strand at 658.279 kb on + strand at 658.296 kb on + strand at 658.296 kb on + strand at 658.297 kb on - strand at 658.302 kb on + strand at 658.479 kb on - strand, within PP_0566 at 658.838 kb on - strand at 658.862 kb on + strand at 658.863 kb on - strand at 658.863 kb on - strand at 658.899 kb on + strand at 658.938 kb on - strand at 658.938 kb on - strand at 658.938 kb on - strand at 658.941 kb on + strand at 658.941 kb on + strand at 658.941 kb on + strand at 658.941 kb on + strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.988 kb on - strand at 658.988 kb on - strand at 659.021 kb on + strand at 659.022 kb on - strand at 659.173 kb on - strand, within PP_0567
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 656,668 + -2.7 656,668 + -0.6 656,669 - +1.7 656,808 + PP_0564 0.22 -2.3 656,808 + PP_0564 0.22 +1.3 656,809 - PP_0564 0.22 +1.0 656,833 + PP_0564 0.24 +0.3 656,833 + PP_0564 0.24 -0.0 656,834 - PP_0564 0.24 +0.8 656,835 + PP_0564 0.24 +0.4 656,835 + PP_0564 0.24 -0.8 656,835 + PP_0564 0.24 +0.5 656,835 + PP_0564 0.24 +0.8 656,835 + PP_0564 0.24 -0.7 656,836 - PP_0564 0.25 -1.4 656,836 - PP_0564 0.25 +1.2 656,836 - PP_0564 0.25 -0.9 656,836 - PP_0564 0.25 +0.7 656,836 - PP_0564 0.25 -0.7 656,953 + PP_0564 0.35 -0.5 656,954 - PP_0564 0.35 -0.6 656,997 + PP_0564 0.39 -0.6 657,177 + PP_0564 0.56 +0.2 657,178 - PP_0564 0.56 +0.9 657,184 + PP_0564 0.56 +1.5 657,185 - PP_0564 0.57 +0.5 657,187 - PP_0564 0.57 -0.5 657,386 - PP_0564 0.75 -2.1 657,599 - -1.0 657,665 + +0.3 657,665 + +0.0 657,743 - PP_0565 0.16 -0.1 657,838 + PP_0565 0.33 -0.2 657,848 + PP_0565 0.35 +0.9 657,876 + PP_0565 0.40 -1.8 658,000 - PP_0565 0.64 -1.4 658,039 - PP_0565 0.71 -1.1 658,086 - PP_0565 0.80 -0.3 658,143 + +1.5 658,144 - -0.8 658,144 - +0.0 658,176 + +0.7 658,176 + -1.7 658,176 + -0.4 658,192 - -1.1 658,192 - -0.9 658,279 + -0.7 658,296 + -1.2 658,296 + -0.2 658,297 - -0.1 658,302 + -0.1 658,479 - PP_0566 0.12 -0.7 658,838 - +1.1 658,862 + +1.0 658,863 - +1.0 658,863 - +0.1 658,899 + +0.6 658,938 - +0.3 658,938 - -2.0 658,938 - +0.2 658,941 + +0.6 658,941 + -0.1 658,941 + -1.0 658,941 + -0.1 658,942 - +0.2 658,942 - -1.5 658,942 - -0.1 658,942 - -0.6 658,942 - +1.0 658,942 - -0.3 658,942 - -0.6 658,988 - -2.2 658,988 - +1.4 659,021 + +1.1 659,022 - -1.2 659,173 - PP_0567 0.11 +0.7
Or see this region's nucleotide sequence