Strain Fitness in Pseudomonas putida KT2440 around PP_0360

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0359 and PP_0360 are separated by 65 nucleotidesPP_0360 and PP_0361 are separated by 49 nucleotidesPP_0361 and PP_0362 are separated by 89 nucleotides PP_0359: PP_0359 - serine/threonine protein kinase, at 437,352 to 438,359 _0359 PP_0360: PP_0360 - Molybdate transport regulator, at 438,425 to 439,189 _0360 PP_0361: PP_0361 - putative Competence protein ComF, at 439,239 to 439,970 _0361 PP_0362: PP_0362 - Biotin synthase, at 440,060 to 441,118 _0362 Position (kb) 438 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.499 kb on - strand, within PP_0359at 437.499 kb on - strand, within PP_0359at 437.500 kb on + strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.576 kb on - strand, within PP_0359at 437.692 kb on + strand, within PP_0359at 437.692 kb on + strand, within PP_0359at 437.693 kb on - strand, within PP_0359at 437.693 kb on - strand, within PP_0359at 437.693 kb on - strand, within PP_0359at 437.770 kb on + strand, within PP_0359at 437.770 kb on + strand, within PP_0359at 437.770 kb on + strand, within PP_0359at 437.771 kb on - strand, within PP_0359at 437.771 kb on - strand, within PP_0359at 437.771 kb on - strand, within PP_0359at 437.846 kb on + strand, within PP_0359at 437.952 kb on + strand, within PP_0359at 437.952 kb on + strand, within PP_0359at 437.952 kb on + strand, within PP_0359at 438.212 kb on - strand, within PP_0359at 438.226 kb on + strand, within PP_0359at 438.227 kb on - strand, within PP_0359at 438.227 kb on - strand, within PP_0359at 438.227 kb on - strand, within PP_0359at 438.343 kb on - strandat 438.362 kb on + strandat 438.370 kb on + strandat 438.370 kb on + strandat 438.427 kb on - strandat 438.427 kb on - strandat 438.450 kb on + strandat 438.450 kb on + strandat 438.451 kb on - strandat 438.451 kb on - strandat 438.622 kb on + strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.656 kb on + strand, within PP_0360at 438.657 kb on - strand, within PP_0360at 438.677 kb on + strand, within PP_0360at 438.678 kb on - strand, within PP_0360at 438.790 kb on - strand, within PP_0360at 438.905 kb on + strand, within PP_0360at 438.936 kb on + strand, within PP_0360at 438.936 kb on + strand, within PP_0360at 438.937 kb on - strand, within PP_0360at 439.069 kb on - strand, within PP_0360at 439.069 kb on - strand, within PP_0360at 439.076 kb on - strand, within PP_0360at 439.120 kb on + strandat 439.120 kb on + strandat 439.121 kb on - strandat 439.121 kb on - strandat 439.121 kb on - strandat 439.193 kb on + strandat 439.193 kb on + strandat 439.193 kb on + strandat 439.201 kb on - strandat 439.201 kb on - strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.203 kb on - strandat 439.203 kb on - strandat 439.216 kb on - strandat 439.216 kb on - strandat 439.216 kb on - strandat 439.242 kb on + strandat 439.242 kb on + strandat 439.242 kb on + strandat 439.242 kb on + strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.246 kb on + strandat 439.246 kb on + strandat 439.262 kb on + strandat 439.262 kb on + strandat 439.263 kb on - strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.277 kb on - strandat 439.277 kb on - strandat 439.277 kb on - strandat 439.277 kb on - strandat 439.621 kb on + strand, within PP_0361at 439.627 kb on + strand, within PP_0361at 439.627 kb on + strand, within PP_0361at 439.628 kb on - strand, within PP_0361at 439.628 kb on - strand, within PP_0361at 439.902 kb on + strandat 439.902 kb on + strandat 439.903 kb on - strandat 439.970 kb on + strandat 439.971 kb on - strandat 439.985 kb on + strandat 439.986 kb on - strandat 439.986 kb on - strandat 439.995 kb on - strandat 439.995 kb on - strandat 440.037 kb on - strandat 440.043 kb on + strandat 440.044 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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437,498 + PP_0359 0.14 -1.2
437,498 + PP_0359 0.14 +1.1
437,498 + PP_0359 0.14 +0.3
437,498 + PP_0359 0.14 +0.6
437,498 + PP_0359 0.14 -1.5
437,498 + PP_0359 0.14 +0.6
437,499 - PP_0359 0.15 -0.0
437,499 - PP_0359 0.15 +0.7
437,500 + PP_0359 0.15 -0.0
437,501 - PP_0359 0.15 -2.0
437,501 - PP_0359 0.15 +1.7
437,501 - PP_0359 0.15 -0.5
437,501 - PP_0359 0.15 -1.3
437,576 - PP_0359 0.22 -0.1
437,692 + PP_0359 0.34 +0.9
437,692 + PP_0359 0.34 +2.2
437,693 - PP_0359 0.34 +0.5
437,693 - PP_0359 0.34 -1.1
437,693 - PP_0359 0.34 -2.8
437,770 + PP_0359 0.41 -1.7
437,770 + PP_0359 0.41 +0.4
437,770 + PP_0359 0.41 +0.1
437,771 - PP_0359 0.42 -3.4
437,771 - PP_0359 0.42 -1.8
437,771 - PP_0359 0.42 -1.1
437,846 + PP_0359 0.49 -0.4
437,952 + PP_0359 0.60 -0.8
437,952 + PP_0359 0.60 -2.0
437,952 + PP_0359 0.60 +0.6
438,212 - PP_0359 0.85 +1.3
438,226 + PP_0359 0.87 +0.8
438,227 - PP_0359 0.87 -1.5
438,227 - PP_0359 0.87 +0.0
438,227 - PP_0359 0.87 +1.1
438,343 - -1.4
438,362 + +0.0
438,370 + -2.0
438,370 + -1.3
438,427 - -0.1
438,427 - -1.4
438,450 + -1.9
438,450 + -1.4
438,451 - -1.5
438,451 - +0.3
438,622 + PP_0360 0.26 -0.6
438,623 - PP_0360 0.26 -0.3
438,623 - PP_0360 0.26 -2.6
438,623 - PP_0360 0.26 +0.6
438,623 - PP_0360 0.26 +0.9
438,656 + PP_0360 0.30 -2.5
438,657 - PP_0360 0.30 -0.8
438,677 + PP_0360 0.33 -0.4
438,678 - PP_0360 0.33 +0.5
438,790 - PP_0360 0.48 -0.4
438,905 + PP_0360 0.63 -0.2
438,936 + PP_0360 0.67 -0.0
438,936 + PP_0360 0.67 -1.6
438,937 - PP_0360 0.67 -1.0
439,069 - PP_0360 0.84 -0.1
439,069 - PP_0360 0.84 +0.1
439,076 - PP_0360 0.85 -0.7
439,120 + +0.0
439,120 + -2.0
439,121 - +0.3
439,121 - +0.2
439,121 - +0.6
439,193 + +0.9
439,193 + -2.6
439,193 + -0.5
439,201 - -1.1
439,201 - -0.7
439,202 + -0.0
439,202 + -0.3
439,202 + -0.3
439,202 + -0.1
439,202 + -0.8
439,202 + -0.7
439,203 - -1.1
439,203 - -1.8
439,216 - -1.1
439,216 - -0.8
439,216 - +1.3
439,242 + -0.8
439,242 + +1.5
439,242 + -0.8
439,242 + +0.6
439,243 - +0.4
439,243 - +0.6
439,243 - +0.2
439,243 - -0.4
439,243 - -1.4
439,243 - +0.4
439,243 - +0.5
439,243 - -0.5
439,243 - -0.3
439,243 - -0.3
439,243 - -0.1
439,246 + +1.1
439,246 + +0.8
439,262 + -0.6
439,262 + -0.5
439,263 - -0.1
439,276 + -0.7
439,276 + -0.4
439,276 + +1.4
439,276 + -0.9
439,276 + +0.4
439,277 - -1.1
439,277 - -1.8
439,277 - -2.5
439,277 - -0.2
439,621 + PP_0361 0.52 -1.8
439,627 + PP_0361 0.53 -0.1
439,627 + PP_0361 0.53 -1.5
439,628 - PP_0361 0.53 +0.1
439,628 - PP_0361 0.53 +0.4
439,902 + -0.2
439,902 + +0.4
439,903 - -3.2
439,970 + +0.4
439,971 - +1.0
439,985 + -0.6
439,986 - +0.7
439,986 - -0.1
439,995 - -0.5
439,995 - -0.3
440,037 - -0.8
440,043 + -0.2
440,044 - -1.3

Or see this region's nucleotide sequence