Strain Fitness in Pseudomonas putida KT2440 around PP_0329

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0328 and PP_0329 are separated by 203 nucleotidesPP_0329 and PP_0330 are separated by 193 nucleotidesPP_0330 and PP_0331 are separated by 20 nucleotides PP_0328: PP_0328 - formaldehyde dehydrogenase, at 394,619 to 395,818 _0328 PP_0329: PP_0329 - conserved protein of unknown function, at 396,022 to 396,945 _0329 PP_0330: PP_0330 - hypothetical protein, at 397,139 to 397,714 _0330 PP_0331: PP_0331 - conserved protein of unknown function, at 397,735 to 398,484 _0331 Position (kb) 396 397Strain fitness (log2 ratio) -2 -1 0 1 2at 395.033 kb on + strand, within PP_0328at 395.033 kb on + strand, within PP_0328at 395.033 kb on + strand, within PP_0328at 395.034 kb on - strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.190 kb on - strand, within PP_0328at 395.190 kb on - strand, within PP_0328at 395.259 kb on + strand, within PP_0328at 395.260 kb on - strand, within PP_0328at 395.260 kb on - strand, within PP_0328at 395.525 kb on + strand, within PP_0328at 395.525 kb on + strand, within PP_0328at 395.525 kb on + strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.526 kb on - strandat 395.526 kb on - strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.648 kb on + strand, within PP_0328at 395.747 kb on + strandat 395.748 kb on - strandat 395.748 kb on - strandat 395.748 kb on - strandat 395.817 kb on - strandat 395.869 kb on - strandat 395.903 kb on - strandat 395.943 kb on + strandat 395.943 kb on + strandat 395.943 kb on + strandat 395.943 kb on + strandat 395.944 kb on - strandat 395.944 kb on - strandat 395.944 kb on - strandat 395.944 kb on - strandat 396.077 kb on + strandat 396.078 kb on - strandat 396.078 kb on - strandat 396.120 kb on - strand, within PP_0329at 396.120 kb on - strand, within PP_0329at 396.120 kb on - strand, within PP_0329at 396.162 kb on - strand, within PP_0329at 396.242 kb on - strand, within PP_0329at 396.246 kb on - strand, within PP_0329at 396.246 kb on - strand, within PP_0329at 396.448 kb on - strand, within PP_0329at 396.465 kb on + strand, within PP_0329at 396.635 kb on + strand, within PP_0329at 396.635 kb on + strand, within PP_0329at 396.635 kb on + strand, within PP_0329at 396.636 kb on - strand, within PP_0329at 396.636 kb on - strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.644 kb on - strand, within PP_0329at 396.656 kb on - strand, within PP_0329at 396.710 kb on + strand, within PP_0329at 396.725 kb on + strand, within PP_0329at 396.725 kb on + strand, within PP_0329at 396.725 kb on + strand, within PP_0329at 396.726 kb on - strand, within PP_0329at 396.912 kb on - strandat 396.917 kb on + strandat 396.918 kb on - strandat 396.927 kb on + strandat 396.982 kb on + strandat 396.983 kb on - strandat 396.983 kb on - strandat 396.983 kb on - strandat 396.998 kb on + strandat 397.030 kb on + strandat 397.049 kb on + strandat 397.049 kb on + strandat 397.049 kb on + strandat 397.050 kb on - strandat 397.050 kb on - strandat 397.050 kb on - strandat 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.392 kb on - strand, within PP_0330at 397.392 kb on - strand, within PP_0330at 397.392 kb on - strand, within PP_0330at 397.444 kb on + strand, within PP_0330at 397.444 kb on + strand, within PP_0330at 397.445 kb on - strand, within PP_0330at 397.454 kb on - strand, within PP_0330at 397.543 kb on + strand, within PP_0330at 397.544 kb on - strand, within PP_0330at 397.544 kb on - strand, within PP_0330at 397.622 kb on + strand, within PP_0330at 397.623 kb on - strand, within PP_0330at 397.623 kb on - strand, within PP_0330at 397.739 kb on - strandat 397.830 kb on - strand, within PP_0331at 397.895 kb on + strand, within PP_0331at 397.896 kb on - strand, within PP_0331at 397.939 kb on - strand, within PP_0331at 397.939 kb on - strand, within PP_0331at 397.940 kb on + strand, within PP_0331

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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395,033 + PP_0328 0.34 -1.1
395,033 + PP_0328 0.34 -0.5
395,033 + PP_0328 0.34 -0.1
395,034 - PP_0328 0.35 -0.3
395,189 + PP_0328 0.47 -1.6
395,189 + PP_0328 0.47 +1.9
395,189 + PP_0328 0.47 -0.4
395,189 + PP_0328 0.47 +1.0
395,189 + PP_0328 0.47 +0.5
395,190 - PP_0328 0.48 +0.4
395,190 - PP_0328 0.48 +0.7
395,259 + PP_0328 0.53 +0.2
395,260 - PP_0328 0.53 +0.4
395,260 - PP_0328 0.53 -0.9
395,525 + PP_0328 0.76 -1.6
395,525 + PP_0328 0.76 +0.5
395,525 + PP_0328 0.76 -0.2
395,526 - PP_0328 0.76 -0.2
395,526 - PP_0328 0.76 +0.6
395,526 - +1.5
395,526 - PP_0328 0.76 +0.7
395,526 - PP_0328 0.76 +0.7
395,526 - PP_0328 0.76 -0.5
395,526 - PP_0328 0.76 +0.8
395,526 - PP_0328 0.76 +1.8
395,648 + PP_0328 0.86 -0.0
395,747 + +1.2
395,748 - +0.2
395,748 - -0.0
395,748 - +0.1
395,817 - -0.8
395,869 - +0.6
395,903 - +1.1
395,943 + -0.3
395,943 + +0.9
395,943 + +1.1
395,943 + +0.8
395,944 - -0.9
395,944 - +0.5
395,944 - -1.0
395,944 - +0.8
396,077 + +0.7
396,078 - -0.8
396,078 - +0.7
396,120 - PP_0329 0.11 -0.7
396,120 - PP_0329 0.11 -1.0
396,120 - PP_0329 0.11 -1.1
396,162 - PP_0329 0.15 -1.4
396,242 - PP_0329 0.24 +0.1
396,246 - PP_0329 0.24 -0.8
396,246 - PP_0329 0.24 -1.5
396,448 - PP_0329 0.46 +0.5
396,465 + PP_0329 0.48 -0.7
396,635 + PP_0329 0.66 +0.1
396,635 + PP_0329 0.66 -0.7
396,635 + PP_0329 0.66 -1.9
396,636 - PP_0329 0.66 +1.0
396,636 - PP_0329 0.66 -0.8
396,643 + PP_0329 0.67 +0.7
396,643 + PP_0329 0.67 +0.1
396,643 + PP_0329 0.67 -0.3
396,643 + PP_0329 0.67 +0.3
396,643 + PP_0329 0.67 -1.9
396,644 - PP_0329 0.67 -1.1
396,656 - PP_0329 0.69 +0.5
396,710 + PP_0329 0.74 -2.0
396,725 + PP_0329 0.76 +0.9
396,725 + PP_0329 0.76 -0.7
396,725 + PP_0329 0.76 -1.4
396,726 - PP_0329 0.76 +0.1
396,912 - -0.6
396,917 + -0.1
396,918 - -0.3
396,927 + +1.1
396,982 + +1.2
396,983 - -1.4
396,983 - -1.8
396,983 - +1.0
396,998 + -0.1
397,030 + +1.0
397,049 + +0.7
397,049 + +0.2
397,049 + +0.0
397,050 - +0.8
397,050 - +0.1
397,050 - -1.2
397,379 - PP_0330 0.42 -1.1
397,379 - PP_0330 0.42 +0.5
397,379 - PP_0330 0.42 +0.8
397,379 - PP_0330 0.42 -0.7
397,379 - PP_0330 0.42 -0.6
397,392 - PP_0330 0.44 +0.2
397,392 - PP_0330 0.44 -2.0
397,392 - PP_0330 0.44 -0.1
397,444 + PP_0330 0.53 -1.3
397,444 + PP_0330 0.53 +0.5
397,445 - PP_0330 0.53 -0.3
397,454 - PP_0330 0.55 +0.1
397,543 + PP_0330 0.70 -0.4
397,544 - PP_0330 0.70 +0.2
397,544 - PP_0330 0.70 -0.9
397,622 + PP_0330 0.84 -1.2
397,623 - PP_0330 0.84 +0.0
397,623 - PP_0330 0.84 +0.1
397,739 - -1.1
397,830 - PP_0331 0.13 +1.4
397,895 + PP_0331 0.21 +1.1
397,896 - PP_0331 0.21 +0.0
397,939 - PP_0331 0.27 -0.0
397,939 - PP_0331 0.27 +0.3
397,940 + PP_0331 0.27 +1.2

Or see this region's nucleotide sequence