Strain Fitness in Pseudomonas putida KT2440 around PP_0284

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0283 and PP_5438 are separated by 77 nucleotidesPP_5438 and PP_0284 are separated by 377 nucleotidesPP_0284 and PP_5439 are separated by 131 nucleotidesPP_5439 and PP_5440 are separated by 239 nucleotides PP_0283: PP_0283 - Arginine/ornithine transport ATP-binding protein AotP, at 340,079 to 340,852 _0283 PP_5438: PP_5438 - conserved protein of unknown function, at 340,930 to 341,106 _5438 PP_0284: PP_0284 - gamma-aminobutyrate permease, at 341,484 to 342,869 _0284 PP_5439: PP_5439 - conserved protein of unknown function, at 343,001 to 343,444 _5439 PP_5440: PP_5440 - conserved protein of unknown function, at 343,684 to 343,911 _5440 Position (kb) 341 342 343Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 340.717 kb on + strand, within PP_0283at 340.717 kb on + strand, within PP_0283at 340.718 kb on - strand, within PP_0283at 340.785 kb on - strandat 340.803 kb on + strandat 340.917 kb on + strandat 340.917 kb on + strandat 340.917 kb on + strandat 340.918 kb on - strandat 340.918 kb on - strandat 340.923 kb on - strandat 340.923 kb on - strandat 340.931 kb on + strandat 340.932 kb on - strandat 340.999 kb on + strand, within PP_5438at 341.115 kb on + strandat 341.115 kb on + strandat 341.138 kb on + strandat 341.169 kb on - strandat 341.181 kb on + strandat 341.181 kb on + strandat 341.181 kb on + strandat 341.182 kb on - strandat 341.226 kb on + strandat 341.254 kb on - strandat 341.262 kb on - strandat 341.331 kb on + strandat 341.332 kb on - strandat 341.332 kb on - strandat 341.332 kb on - strandat 341.417 kb on + strandat 341.418 kb on - strandat 341.418 kb on - strandat 341.442 kb on - strandat 341.468 kb on + strandat 341.476 kb on + strandat 341.582 kb on - strandat 341.582 kb on - strandat 341.631 kb on + strand, within PP_0284at 341.631 kb on + strand, within PP_0284at 341.632 kb on - strand, within PP_0284at 341.632 kb on - strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.669 kb on + strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.670 kb on - strand, within PP_0284at 341.717 kb on + strand, within PP_0284at 341.717 kb on + strand, within PP_0284at 341.718 kb on - strand, within PP_0284at 341.721 kb on + strand, within PP_0284at 341.721 kb on + strand, within PP_0284at 341.722 kb on - strand, within PP_0284at 341.722 kb on - strand, within PP_0284at 341.772 kb on + strand, within PP_0284at 341.773 kb on - strand, within PP_0284at 341.923 kb on - strand, within PP_0284at 342.014 kb on - strand, within PP_0284at 342.036 kb on - strand, within PP_0284at 342.213 kb on - strand, within PP_0284at 342.225 kb on + strand, within PP_0284at 342.225 kb on + strand, within PP_0284at 342.225 kb on + strand, within PP_0284at 342.225 kb on + strand, within PP_0284at 342.225 kb on + strand, within PP_0284at 342.226 kb on - strand, within PP_0284at 342.226 kb on - strand, within PP_0284at 342.298 kb on - strand, within PP_0284at 342.298 kb on - strand, within PP_0284at 342.317 kb on + strand, within PP_0284at 342.396 kb on + strand, within PP_0284at 342.396 kb on + strand, within PP_0284at 342.397 kb on - strand, within PP_0284at 342.603 kb on + strand, within PP_0284at 342.604 kb on - strand, within PP_0284at 342.794 kb on + strandat 342.795 kb on - strandat 342.989 kb on + strandat 342.989 kb on + strandat 342.990 kb on - strandat 342.990 kb on - strandat 342.991 kb on + strandat 342.991 kb on + strandat 342.991 kb on + strandat 342.991 kb on + strandat 342.992 kb on - strandat 342.992 kb on - strandat 342.992 kb on - strandat 342.992 kb on - strandat 342.992 kb on - strandat 343.057 kb on + strand, within PP_5439at 343.059 kb on + strand, within PP_5439at 343.059 kb on + strand, within PP_5439at 343.060 kb on - strand, within PP_5439at 343.060 kb on - strand, within PP_5439at 343.060 kb on - strand, within PP_5439at 343.158 kb on + strand, within PP_5439at 343.158 kb on + strand, within PP_5439at 343.159 kb on - strand, within PP_5439at 343.314 kb on + strand, within PP_5439at 343.314 kb on + strand, within PP_5439at 343.315 kb on - strand, within PP_5439at 343.373 kb on + strand, within PP_5439at 343.479 kb on - strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.549 kb on - strandat 343.549 kb on - strandat 343.549 kb on - strandat 343.553 kb on - strandat 343.553 kb on - strandat 343.561 kb on + strandat 343.583 kb on + strandat 343.584 kb on - strandat 343.584 kb on - strandat 343.584 kb on - strandat 343.584 kb on - strandat 343.669 kb on + strandat 343.669 kb on + strandat 343.697 kb on - strandat 343.717 kb on + strand, within PP_5440at 343.717 kb on + strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.741 kb on + strand, within PP_5440at 343.742 kb on - strand, within PP_5440at 343.779 kb on + strand, within PP_5440at 343.779 kb on + strand, within PP_5440at 343.780 kb on - strand, within PP_5440at 343.852 kb on + strand, within PP_5440at 343.852 kb on + strand, within PP_5440at 343.853 kb on - strand, within PP_5440at 343.853 kb on - strand, within PP_5440at 343.853 kb on - strand, within PP_5440

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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340,717 + PP_0283 0.82 +2.1
340,717 + PP_0283 0.82 -1.8
340,718 - PP_0283 0.83 +1.0
340,785 - -0.2
340,803 + +0.5
340,917 + -0.8
340,917 + +1.3
340,917 + -1.4
340,918 - -1.7
340,918 - +0.3
340,923 - +1.1
340,923 - -0.2
340,931 + +0.9
340,932 - +0.7
340,999 + PP_5438 0.39 +0.6
341,115 + -1.4
341,115 + -1.2
341,138 + +0.6
341,169 - -2.2
341,181 + +1.3
341,181 + +0.2
341,181 + -2.0
341,182 - -0.4
341,226 + +0.7
341,254 - -1.3
341,262 - +1.2
341,331 + -0.1
341,332 - -1.8
341,332 - +0.9
341,332 - +0.0
341,417 + -0.7
341,418 - +0.3
341,418 - +1.1
341,442 - +0.1
341,468 + +0.5
341,476 + -0.0
341,582 - -2.7
341,582 - +0.1
341,631 + PP_0284 0.11 -0.6
341,631 + PP_0284 0.11 +0.1
341,632 - PP_0284 0.11 -0.9
341,632 - PP_0284 0.11 +0.1
341,669 + PP_0284 0.13 -0.6
341,669 + PP_0284 0.13 -0.8
341,669 + PP_0284 0.13 +0.1
341,669 + PP_0284 0.13 +0.3
341,669 + PP_0284 0.13 +1.8
341,669 + PP_0284 0.13 +0.9
341,669 + PP_0284 0.13 -2.6
341,669 + PP_0284 0.13 +0.3
341,670 - PP_0284 0.13 -2.6
341,670 - PP_0284 0.13 -0.4
341,670 - PP_0284 0.13 +0.5
341,670 - PP_0284 0.13 +0.9
341,670 - PP_0284 0.13 +1.0
341,670 - PP_0284 0.13 +1.3
341,670 - PP_0284 0.13 +0.2
341,717 + PP_0284 0.17 -0.7
341,717 + PP_0284 0.17 -0.6
341,718 - PP_0284 0.17 +1.1
341,721 + PP_0284 0.17 -1.0
341,721 + PP_0284 0.17 -0.4
341,722 - PP_0284 0.17 -1.6
341,722 - PP_0284 0.17 -0.7
341,772 + PP_0284 0.21 -1.4
341,773 - PP_0284 0.21 -1.9
341,923 - PP_0284 0.32 -0.6
342,014 - PP_0284 0.38 -1.1
342,036 - PP_0284 0.40 -0.3
342,213 - PP_0284 0.53 -0.7
342,225 + PP_0284 0.53 -1.2
342,225 + PP_0284 0.53 +0.1
342,225 + PP_0284 0.53 -0.5
342,225 + PP_0284 0.53 -1.3
342,225 + PP_0284 0.53 -2.0
342,226 - PP_0284 0.54 +0.0
342,226 - PP_0284 0.54 -1.6
342,298 - PP_0284 0.59 -1.2
342,298 - PP_0284 0.59 -0.7
342,317 + PP_0284 0.60 -0.8
342,396 + PP_0284 0.66 -2.6
342,396 + PP_0284 0.66 -1.5
342,397 - PP_0284 0.66 +0.2
342,603 + PP_0284 0.81 +0.7
342,604 - PP_0284 0.81 +0.2
342,794 + -1.8
342,795 - -0.8
342,989 + -0.9
342,989 + +0.2
342,990 - -0.9
342,990 - +1.1
342,991 + -0.3
342,991 + +0.1
342,991 + +0.7
342,991 + -1.4
342,992 - -1.6
342,992 - +0.8
342,992 - +2.2
342,992 - +0.3
342,992 - +0.1
343,057 + PP_5439 0.13 -0.4
343,059 + PP_5439 0.13 -0.2
343,059 + PP_5439 0.13 -2.8
343,060 - PP_5439 0.13 +0.6
343,060 - PP_5439 0.13 -0.3
343,060 - PP_5439 0.13 -1.8
343,158 + PP_5439 0.35 -1.1
343,158 + PP_5439 0.35 -1.0
343,159 - PP_5439 0.36 -2.3
343,314 + PP_5439 0.70 +2.3
343,314 + PP_5439 0.70 -0.8
343,315 - PP_5439 0.71 -0.1
343,373 + PP_5439 0.84 -1.6
343,479 - -0.3
343,548 + +1.7
343,548 + -0.2
343,548 + +0.7
343,548 + -0.1
343,548 + -0.1
343,548 + -0.2
343,549 - -1.3
343,549 - +1.0
343,549 - -0.7
343,553 - +0.5
343,553 - +0.4
343,561 + +0.3
343,583 + -0.5
343,584 - -0.4
343,584 - -1.6
343,584 - +0.3
343,584 - +1.5
343,669 + -1.6
343,669 + -1.5
343,697 - +1.3
343,717 + PP_5440 0.14 +1.7
343,717 + PP_5440 0.14 +0.7
343,739 - PP_5440 0.24 -0.4
343,739 - PP_5440 0.24 +1.0
343,739 - PP_5440 0.24 +0.3
343,739 - PP_5440 0.24 -0.2
343,741 + PP_5440 0.25 -0.6
343,742 - PP_5440 0.25 -1.1
343,779 + PP_5440 0.42 -1.3
343,779 + PP_5440 0.42 +1.0
343,780 - PP_5440 0.42 -2.9
343,852 + PP_5440 0.74 +0.5
343,852 + PP_5440 0.74 -0.2
343,853 - PP_5440 0.74 -1.1
343,853 - PP_5440 0.74 +1.5
343,853 - PP_5440 0.74 +0.4

Or see this region's nucleotide sequence