Strain Fitness in Pseudomonas putida KT2440 around PP_0225

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0224 and PP_0225 are separated by 313 nucleotidesPP_0225 and PP_0226 are separated by 2 nucleotidesPP_0226 and PP_0227 overlap by 4 nucleotides PP_0224: PP_0224 - Monooxygenase, DszC family, at 277,264 to 278,505 _0224 PP_0225: PP_0225 - sulfur compound ABC transporter - ATP-binding subunit, at 278,819 to 279,577 _0225 PP_0226: PP_0226 - sulfur compound ABC transporter - permease subunit, at 279,580 to 280,248 _0226 PP_0227: PP_0227 - periplasmic cystine-binding protein, at 280,245 to 281,039 _0227 Position (kb) 278 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 277.948 kb on + strand, within PP_0224at 277.994 kb on + strand, within PP_0224at 277.995 kb on - strand, within PP_0224at 278.011 kb on + strand, within PP_0224at 278.012 kb on - strand, within PP_0224at 278.012 kb on - strand, within PP_0224at 278.434 kb on + strandat 278.476 kb on - strandat 278.591 kb on - strandat 278.594 kb on + strandat 278.656 kb on - strandat 278.753 kb on + strandat 278.782 kb on + strandat 278.782 kb on + strandat 278.783 kb on - strandat 278.783 kb on - strandat 278.866 kb on + strandat 278.867 kb on - strandat 279.035 kb on + strand, within PP_0225at 279.089 kb on + strand, within PP_0225at 279.089 kb on + strand, within PP_0225at 279.089 kb on + strand, within PP_0225at 279.090 kb on - strand, within PP_0225at 279.090 kb on - strand, within PP_0225at 279.090 kb on - strand, within PP_0225at 279.162 kb on + strand, within PP_0225at 279.385 kb on + strand, within PP_0225at 279.386 kb on - strand, within PP_0225at 279.399 kb on - strand, within PP_0225at 279.399 kb on - strand, within PP_0225at 279.660 kb on - strand, within PP_0226at 279.660 kb on - strand, within PP_0226at 279.660 kb on - strand, within PP_0226at 279.680 kb on + strand, within PP_0226at 279.680 kb on + strand, within PP_0226at 279.680 kb on + strand, within PP_0226at 279.681 kb on - strand, within PP_0226at 279.681 kb on - strand, within PP_0226at 279.681 kb on - strand, within PP_0226at 279.939 kb on + strand, within PP_0226at 279.939 kb on + strand, within PP_0226at 279.940 kb on - strand, within PP_0226at 279.940 kb on - strand, within PP_0226at 279.940 kb on - strand, within PP_0226at 279.941 kb on + strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.023 kb on - strand, within PP_0226at 280.023 kb on - strand, within PP_0226at 280.023 kb on - strand, within PP_0226at 280.074 kb on - strand, within PP_0226at 280.074 kb on - strand, within PP_0226at 280.074 kb on - strand, within PP_0226at 280.182 kb on + strandat 280.182 kb on + strandat 280.182 kb on + strandat 280.182 kb on + strandat 280.182 kb on + strandat 280.184 kb on + strandat 280.184 kb on + strandat 280.271 kb on - strandat 280.271 kb on - strandat 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.564 kb on + strand, within PP_0227at 280.564 kb on + strand, within PP_0227at 280.565 kb on - strand, within PP_0227at 280.565 kb on - strand, within PP_0227at 280.565 kb on - strand, within PP_0227

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
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277,948 + PP_0224 0.55 -2.3
277,994 + PP_0224 0.59 +1.6
277,995 - PP_0224 0.59 -0.1
278,011 + PP_0224 0.60 -2.0
278,012 - PP_0224 0.60 +0.1
278,012 - PP_0224 0.60 +0.8
278,434 + +0.1
278,476 - -0.3
278,591 - -1.3
278,594 + -1.6
278,656 - -0.3
278,753 + -1.6
278,782 + +1.2
278,782 + +0.9
278,783 - -1.4
278,783 - -1.9
278,866 + -0.2
278,867 - +1.3
279,035 + PP_0225 0.28 -0.4
279,089 + PP_0225 0.36 +0.5
279,089 + PP_0225 0.36 -0.7
279,089 + PP_0225 0.36 -0.9
279,090 - PP_0225 0.36 -0.2
279,090 - PP_0225 0.36 -0.7
279,090 - PP_0225 0.36 +0.9
279,162 + PP_0225 0.45 -0.5
279,385 + PP_0225 0.75 -1.0
279,386 - PP_0225 0.75 -1.3
279,399 - PP_0225 0.76 -0.2
279,399 - PP_0225 0.76 -1.3
279,660 - PP_0226 0.12 -0.5
279,660 - PP_0226 0.12 -2.1
279,660 - PP_0226 0.12 +1.5
279,680 + PP_0226 0.15 +0.3
279,680 + PP_0226 0.15 -2.1
279,680 + PP_0226 0.15 +0.4
279,681 - PP_0226 0.15 -0.7
279,681 - PP_0226 0.15 +1.0
279,681 - PP_0226 0.15 -2.8
279,939 + PP_0226 0.54 -0.5
279,939 + PP_0226 0.54 -0.9
279,940 - PP_0226 0.54 -0.3
279,940 - PP_0226 0.54 +1.1
279,940 - PP_0226 0.54 +0.2
279,941 + PP_0226 0.54 -0.3
279,942 - PP_0226 0.54 +1.1
279,942 - PP_0226 0.54 +1.0
279,942 - PP_0226 0.54 +0.2
279,942 - PP_0226 0.54 -0.5
279,942 - PP_0226 0.54 -0.5
280,022 + PP_0226 0.66 -0.6
280,022 + PP_0226 0.66 -0.6
280,022 + PP_0226 0.66 +0.1
280,022 + PP_0226 0.66 -1.1
280,023 - PP_0226 0.66 +2.0
280,023 - PP_0226 0.66 -0.8
280,023 - PP_0226 0.66 +0.2
280,074 - PP_0226 0.74 -1.8
280,074 - PP_0226 0.74 -1.0
280,074 - PP_0226 0.74 +0.3
280,182 + -0.7
280,182 + +0.6
280,182 + -0.0
280,182 + -0.5
280,182 + +0.8
280,184 + -0.9
280,184 + +0.8
280,271 - -2.5
280,271 - -0.5
280,516 + PP_0227 0.34 -0.9
280,516 + PP_0227 0.34 +1.7
280,516 + PP_0227 0.34 -1.3
280,516 + PP_0227 0.34 -0.0
280,516 + PP_0227 0.34 -0.8
280,516 + PP_0227 0.34 -2.3
280,517 - PP_0227 0.34 -1.3
280,517 - PP_0227 0.34 -0.3
280,517 - PP_0227 0.34 -1.3
280,564 + PP_0227 0.40 -0.5
280,564 + PP_0227 0.40 +0.7
280,565 - PP_0227 0.40 -0.9
280,565 - PP_0227 0.40 -0.5
280,565 - PP_0227 0.40 -0.3

Or see this region's nucleotide sequence