Strain Fitness in Pseudomonas putida KT2440 around PP_5231

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,963,813	+		PP_5229	0.86	+1.9
5,963,813	+		PP_5229	0.86	-2.6
5,963,813	+		PP_5229	0.86	-1.6
5,963,813	+		PP_5229	0.86	-0.5
5,963,814	-		PP_5229	0.86	-1.9
5,963,846	+				+0.6
5,963,847	-				-1.1
5,963,847	-				-0.4
5,963,847	-				-0.6
5,963,847	-				-0.7
5,963,932	+				-0.6
5,963,932	+				+1.2
5,963,933	-				-0.4
5,963,987	-				-2.6
5,964,151	+		PP_5230	0.27	+0.2
5,964,158	-		PP_5230	0.27	-0.5
5,964,239	+		PP_5230	0.36	-1.3
5,964,331	+		PP_5230	0.47	-2.4
5,964,344	+		PP_5230	0.48	-0.4
5,964,344	+		PP_5230	0.48	-1.0
5,964,410	+		PP_5230	0.55	-1.4
5,964,410	+		PP_5230	0.55	-1.1
5,964,411	-		PP_5230	0.56	-0.9
5,964,411	-		PP_5230	0.56	-0.1
5,964,481	+		PP_5230	0.63	-2.8
5,964,724	+				+0.4
5,964,725	-				-0.6
5,964,761	-				+0.5
5,965,050	+		PP_5231	0.35	+3.2
5,965,170	+		PP_5231	0.52	-0.8
5,965,170	+		PP_5231	0.52	+1.4
5,965,170	+		PP_5231	0.52	-0.9
5,965,171	-		PP_5231	0.52	+0.5
5,965,171	-		PP_5231	0.52	-1.8
5,965,171	-		PP_5231	0.52	-0.4
5,965,171	-		PP_5231	0.52	-0.2
5,965,171	-		PP_5231	0.52	+2.6
5,965,171	-		PP_5231	0.52	-0.0
5,965,171	-		PP_5231	0.52	+1.6
5,965,231	-		PP_5231	0.61	-0.0
5,965,558	+				+0.3
5,965,558	+				-1.2
5,965,558	+				-0.3
5,965,622	-				-0.4
5,965,622	-				-0.5
5,965,767	+		PP_5232	0.50	+1.9
5,965,767	+		PP_5232	0.50	+2.4
5,965,936	+				+2.4
5,965,936	+				+1.2
5,965,937	-				+1.9
5,965,937	-				+1.7
5,965,937	-				+0.8
5,965,968	+				+2.0
5,965,969	-				+3.0
5,965,969	-				+0.1
5,966,025	+				+0.9
5,966,026	-				+0.6
5,966,109	-				-0.2
5,966,130	-				-0.4
5,966,141	+				+1.3
5,966,142	-				+0.1
5,966,142	-				+0.4
5,966,198	+				-3.0
5,966,199	-				-0.1
5,966,228	+				+1.2
5,966,229	-				+1.5
5,966,229	-				-1.0
5,966,247	-				+0.1
5,966,260	-				+0.5
5,966,260	-				-0.0
5,966,280	-				-0.1
5,966,362	+				-1.8
5,966,362	+				+2.3
5,966,363	-				-2.6
5,966,363	-				-2.7
5,966,363	-				+0.1
5,966,470	+				-0.3
5,966,470	+				-0.3
5,966,470	+				-0.9
5,966,471	-				+0.3
5,966,471	-				+0.3
5,966,471	-				-1.2