Strain Fitness in Pseudomonas putida KT2440 around PP_5036

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5034 and PP_5035 overlap by 4 nucleotidesPP_5035 and PP_5036 are separated by 108 nucleotidesPP_5036 and PP_5037 are separated by 70 nucleotidesPP_5037 and PP_5038 overlap by 4 nucleotides PP_5034: PP_5034 - Uncharacterized 21.2 kDa protein in hutC 3'region, at 5,737,647 to 5,738,219 _5034 PP_5035: PP_5035 - Histidine utilization repressor, at 5,738,216 to 5,738,962 _5035 PP_5036: PP_5036 - probable formiminoglutamate deiminase, at 5,739,071 to 5,740,435 _5036 PP_5037: PP_5037 - lipocalin family lipoprotein, at 5,740,506 to 5,741,078 _5037 PP_5038: PP_5038 - conserved lipoprotein of unknown function, at 5,741,075 to 5,741,329 _5038 Position (kb) 5739 5740 5741Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5738.427 kb on + strand, within PP_5035at 5738.427 kb on + strand, within PP_5035at 5738.428 kb on - strand, within PP_5035at 5738.428 kb on - strand, within PP_5035at 5738.428 kb on - strand, within PP_5035at 5738.428 kb on - strand, within PP_5035at 5738.433 kb on + strand, within PP_5035at 5738.433 kb on + strand, within PP_5035at 5738.433 kb on + strand, within PP_5035at 5738.434 kb on - strand, within PP_5035at 5738.434 kb on - strand, within PP_5035at 5738.493 kb on + strand, within PP_5035at 5738.493 kb on + strand, within PP_5035at 5738.494 kb on - strand, within PP_5035at 5738.635 kb on + strand, within PP_5035at 5738.635 kb on + strand, within PP_5035at 5738.635 kb on + strand, within PP_5035at 5738.636 kb on - strand, within PP_5035at 5738.636 kb on - strand, within PP_5035at 5738.902 kb on - strandat 5739.040 kb on + strandat 5739.042 kb on + strandat 5739.055 kb on + strandat 5739.102 kb on + strandat 5739.103 kb on - strandat 5739.103 kb on - strandat 5739.106 kb on + strandat 5739.106 kb on + strandat 5739.107 kb on - strandat 5739.131 kb on - strandat 5739.327 kb on - strand, within PP_5036at 5739.383 kb on + strand, within PP_5036at 5739.384 kb on - strand, within PP_5036at 5739.384 kb on - strand, within PP_5036at 5739.431 kb on + strand, within PP_5036at 5739.432 kb on - strand, within PP_5036at 5739.545 kb on + strand, within PP_5036at 5739.546 kb on - strand, within PP_5036at 5739.546 kb on - strand, within PP_5036at 5739.618 kb on - strand, within PP_5036at 5739.618 kb on - strand, within PP_5036at 5739.618 kb on - strand, within PP_5036at 5739.763 kb on + strand, within PP_5036at 5739.840 kb on - strand, within PP_5036at 5739.877 kb on - strand, within PP_5036at 5739.884 kb on - strand, within PP_5036at 5740.048 kb on - strand, within PP_5036at 5740.079 kb on + strand, within PP_5036at 5740.154 kb on + strand, within PP_5036at 5740.154 kb on + strand, within PP_5036at 5740.155 kb on - strand, within PP_5036at 5740.259 kb on + strand, within PP_5036at 5740.259 kb on + strand, within PP_5036at 5740.519 kb on - strandat 5740.521 kb on + strandat 5740.645 kb on + strand, within PP_5037at 5740.645 kb on + strand, within PP_5037at 5740.645 kb on + strand, within PP_5037at 5740.676 kb on + strand, within PP_5037at 5740.677 kb on - strand, within PP_5037at 5740.681 kb on + strand, within PP_5037at 5740.681 kb on + strand, within PP_5037at 5740.732 kb on - strand, within PP_5037at 5740.732 kb on - strand, within PP_5037at 5740.797 kb on - strand, within PP_5037at 5740.861 kb on + strand, within PP_5037at 5740.861 kb on + strand, within PP_5037at 5740.861 kb on + strand, within PP_5037at 5740.861 kb on + strand, within PP_5037at 5740.885 kb on + strand, within PP_5037at 5740.886 kb on - strand, within PP_5037at 5740.945 kb on + strand, within PP_5037at 5740.946 kb on - strand, within PP_5037at 5741.065 kb on + strandat 5741.065 kb on + strandat 5741.065 kb on + strandat 5741.065 kb on + strandat 5741.065 kb on + strandat 5741.066 kb on - strandat 5741.098 kb on - strandat 5741.121 kb on + strand, within PP_5038at 5741.122 kb on - strand, within PP_5038at 5741.122 kb on - strand, within PP_5038at 5741.233 kb on + strand, within PP_5038at 5741.253 kb on + strand, within PP_5038at 5741.253 kb on + strand, within PP_5038at 5741.353 kb on + strandat 5741.353 kb on + strandat 5741.354 kb on - strandat 5741.354 kb on - strandat 5741.419 kb on + strandat 5741.420 kb on - strandat 5741.420 kb on - strandat 5741.420 kb on - strandat 5741.420 kb on - strandat 5741.427 kb on + strandat 5741.427 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.001 mg/ml
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5,738,427 + PP_5035 0.28 -0.1
5,738,427 + PP_5035 0.28 -0.0
5,738,428 - PP_5035 0.28 +0.1
5,738,428 - PP_5035 0.28 +0.1
5,738,428 - PP_5035 0.28 -0.0
5,738,428 - PP_5035 0.28 -1.8
5,738,433 + PP_5035 0.29 +0.2
5,738,433 + PP_5035 0.29 -0.2
5,738,433 + PP_5035 0.29 +0.5
5,738,434 - PP_5035 0.29 -0.8
5,738,434 - PP_5035 0.29 -0.6
5,738,493 + PP_5035 0.37 +0.1
5,738,493 + PP_5035 0.37 -1.2
5,738,494 - PP_5035 0.37 -0.8
5,738,635 + PP_5035 0.56 -0.5
5,738,635 + PP_5035 0.56 +1.1
5,738,635 + PP_5035 0.56 -0.6
5,738,636 - PP_5035 0.56 -0.3
5,738,636 - PP_5035 0.56 -0.8
5,738,902 - +1.3
5,739,040 + -0.3
5,739,042 + +0.3
5,739,055 + -0.0
5,739,102 + -0.3
5,739,103 - +0.4
5,739,103 - -0.4
5,739,106 + -1.4
5,739,106 + +0.1
5,739,107 - +0.2
5,739,131 - +0.1
5,739,327 - PP_5036 0.19 +0.2
5,739,383 + PP_5036 0.23 +0.1
5,739,384 - PP_5036 0.23 +0.1
5,739,384 - PP_5036 0.23 +0.2
5,739,431 + PP_5036 0.26 +2.7
5,739,432 - PP_5036 0.26 +0.3
5,739,545 + PP_5036 0.35 +3.8
5,739,546 - PP_5036 0.35 +0.5
5,739,546 - PP_5036 0.35 +0.7
5,739,618 - PP_5036 0.40 +0.1
5,739,618 - PP_5036 0.40 -0.5
5,739,618 - PP_5036 0.40 -0.1
5,739,763 + PP_5036 0.51 +0.4
5,739,840 - PP_5036 0.56 +0.4
5,739,877 - PP_5036 0.59 +0.7
5,739,884 - PP_5036 0.60 -1.6
5,740,048 - PP_5036 0.72 -2.8
5,740,079 + PP_5036 0.74 +4.9
5,740,154 + PP_5036 0.79 -0.6
5,740,154 + PP_5036 0.79 +0.4
5,740,155 - PP_5036 0.79 +2.4
5,740,259 + PP_5036 0.87 -0.4
5,740,259 + PP_5036 0.87 +0.0
5,740,519 - -1.6
5,740,521 + +1.3
5,740,645 + PP_5037 0.24 +0.6
5,740,645 + PP_5037 0.24 -0.5
5,740,645 + PP_5037 0.24 +0.2
5,740,676 + PP_5037 0.30 +1.6
5,740,677 - PP_5037 0.30 +2.5
5,740,681 + PP_5037 0.31 -0.1
5,740,681 + PP_5037 0.31 -1.0
5,740,732 - PP_5037 0.39 -0.3
5,740,732 - PP_5037 0.39 +0.3
5,740,797 - PP_5037 0.51 +0.1
5,740,861 + PP_5037 0.62 +1.8
5,740,861 + PP_5037 0.62 -1.2
5,740,861 + PP_5037 0.62 +0.0
5,740,861 + PP_5037 0.62 +0.5
5,740,885 + PP_5037 0.66 -0.2
5,740,886 - PP_5037 0.66 +0.0
5,740,945 + PP_5037 0.77 -0.3
5,740,946 - PP_5037 0.77 +0.2
5,741,065 + -0.4
5,741,065 + -1.4
5,741,065 + -1.0
5,741,065 + -0.5
5,741,065 + +1.5
5,741,066 - -0.5
5,741,098 - -0.4
5,741,121 + PP_5038 0.18 +1.4
5,741,122 - PP_5038 0.18 +0.5
5,741,122 - PP_5038 0.18 +0.7
5,741,233 + PP_5038 0.62 -0.1
5,741,253 + PP_5038 0.70 -0.4
5,741,253 + PP_5038 0.70 +0.1
5,741,353 + -0.9
5,741,353 + -1.0
5,741,354 - +3.2
5,741,354 - -0.9
5,741,419 + -0.8
5,741,420 - -1.4
5,741,420 - +1.3
5,741,420 - -0.3
5,741,420 - -0.3
5,741,427 + -0.3
5,741,427 + -0.8

Or see this region's nucleotide sequence