Strain Fitness in Pseudomonas putida KT2440 around PP_4602

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,220,767	+				-0.2
5,220,767	+				+1.5
5,220,768	-				-1.0
5,220,768	-				+1.2
5,220,799	-				+1.1
5,220,826	+				-0.6
5,220,826	+				-0.1
5,220,827	-				+1.4
5,220,842	+				-0.5
5,220,843	-				-0.4
5,220,854	-				+0.1
5,220,952	+				+1.2
5,220,952	+				+0.8
5,220,952	+				+1.1
5,220,952	+				+1.2
5,220,953	-				-0.9
5,221,303	+		PP_4601	0.48	-1.3
5,221,304	-		PP_4601	0.48	-1.0
5,221,304	-		PP_4601	0.48	+1.5
5,221,311	-		PP_4601	0.49	-0.7
5,221,473	-		PP_4601	0.67	+0.4
5,221,556	-		PP_4601	0.77	-1.5
5,221,578	+		PP_4601	0.79	+0.3
5,221,578	+		PP_4601	0.79	+0.2
5,221,578	+		PP_4601	0.79	-0.1
5,221,578	+		PP_4601	0.79	-0.3
5,221,578	+		PP_4601	0.79	+2.2
5,221,579	-		PP_4601	0.79	-0.1
5,221,579	-		PP_4601	0.79	+1.3
5,221,579	-		PP_4601	0.79	-1.1
5,221,642	-		PP_4601	0.86	-2.2
5,221,782	-				+1.2
5,221,795	-				+1.8
5,221,844	+		PP_4602	0.11	+0.2
5,221,845	-		PP_4602	0.11	+4.5
5,221,964	+		PP_4602	0.25	+0.1
5,221,964	+		PP_4602	0.25	+1.3
5,221,964	+		PP_4602	0.25	-0.2
5,221,989	+		PP_4602	0.28	+2.8
5,222,075	+		PP_4602	0.39	-0.4
5,222,076	-		PP_4602	0.39	-2.0
5,222,154	-		PP_4602	0.48	-0.4
5,222,154	-		PP_4602	0.48	+0.2
5,222,201	+		PP_4602	0.54	+2.5
5,222,268	+		PP_4602	0.62	-0.1
5,222,269	-		PP_4602	0.62	-0.3
5,222,378	+		PP_4602	0.75	+0.3
5,222,504	+		PP_4602	0.90	+0.6