Strain Fitness in Pseudomonas putida KT2440 around PP_4348

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
4,939,565	+				+0.3
4,939,598	+				+0.5
4,939,668	+				+0.3
4,939,668	+				+1.3
4,939,696	-				+0.3
4,939,696	-				-0.5
4,939,700	-				+0.2
4,939,754	+				+0.2
4,939,754	+				-1.5
4,940,007	+				+2.3
4,940,007	+				-1.3
4,940,013	+				-1.3
4,940,014	-				-0.4
4,940,014	-				+0.4
4,940,014	-				-1.3
4,940,083	-				-0.4
4,940,185	-				+0.6
4,940,185	-				-0.7
4,940,217	-				+0.3
4,940,224	-				-0.9
4,940,244	+				+0.3
4,940,247	+				+0.6
4,940,394	-				+0.9
4,940,436	-				+0.5
4,940,485	+				+0.7
4,940,485	+				-0.6
4,940,488	+				+2.9
4,940,565	-				+0.8
4,940,565	-				-0.0
4,940,649	-				-0.0
4,940,651	+				-0.8
4,940,810	-		PP_4348	0.24	-0.6
4,941,051	+		PP_4348	0.46	+2.4
4,941,051	+		PP_4348	0.46	+0.5
4,941,167	+		PP_4348	0.56	+0.2
4,941,298	-		PP_4348	0.68	+4.4
4,941,301	+		PP_4348	0.69	+4.2
4,941,301	+		PP_4348	0.69	-2.0
4,941,518	-		PP_4348	0.88	+1.1
4,941,523	+		PP_4348	0.89	+0.1
4,941,712	+				+0.2
4,941,852	+		PP_4349	0.20	+0.2
4,941,853	-		PP_4349	0.20	+0.0
4,941,853	-		PP_4349	0.20	-0.6
4,941,925	+		PP_4349	0.28	-0.9
4,941,927	+		PP_4349	0.28	+0.3
4,941,946	+		PP_4349	0.31	+0.7
4,942,031	+		PP_4349	0.40	+0.1
4,942,033	+		PP_4349	0.41	-0.4
4,942,033	+		PP_4349	0.41	-0.8
4,942,142	-		PP_4349	0.53	+2.2
4,942,291	-		PP_4349	0.70	+0.2
4,942,468	-				-0.5
4,942,544	+				-0.7
4,942,587	+				-0.7
4,942,592	-				+0.4
4,942,592	-				+0.8
4,942,592	-				-1.5