Strain Fitness in Pseudomonas putida KT2440 around PP_4245

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
4,831,214	+				-0.2
4,831,214	+				+0.9
4,831,236	-				+4.0
4,831,253	+				+0.3
4,831,253	+				-0.9
4,831,254	-				-0.1
4,831,254	-				+1.0
4,831,269	+				+0.0
4,831,269	+				+0.2
4,831,269	+				+0.5
4,831,269	+				-1.4
4,831,270	-				+0.4
4,831,270	-				+0.8
4,831,270	-				+0.4
4,831,270	-				-0.8
4,831,270	-				+1.7
4,831,322	-				-0.9
4,831,322	-				-0.6
4,831,322	-				-0.8
4,831,331	+				+0.9
4,831,338	+				-2.5
4,831,362	-				-0.3
4,831,422	+				+0.3
4,831,422	+				-0.4
4,831,439	+				+0.3
4,831,439	+				-0.5
4,831,440	-				-0.7
4,831,508	+				-0.2
4,831,509	-				-1.2
4,831,509	-				-0.9
4,831,518	+				-0.4
4,831,518	+				-1.6
4,831,518	+				+0.3
4,831,536	-				+3.3
4,831,536	-				+1.1
4,831,536	-				-0.4
4,831,622	+		PP_4244	0.24	+0.7
4,831,622	+		PP_4244	0.24	-0.1
4,831,623	-		PP_4244	0.24	-0.9
4,831,623	-		PP_4244	0.24	-1.3
4,831,691	-		PP_4244	0.37	+1.0
4,831,691	-		PP_4244	0.37	+0.7
4,831,730	+		PP_4244	0.44	+0.6
4,831,730	-		PP_4244	0.44	-0.1
4,831,756	+		PP_4244	0.49	+0.7
4,831,757	-		PP_4244	0.49	-0.1
4,831,757	-		PP_4244	0.49	-0.1
4,831,886	-		PP_4244	0.74	-0.8
4,831,886	-		PP_4244	0.74	+1.3
4,831,900	+		PP_4244	0.76	+1.0
4,831,901	-		PP_4244	0.76	+0.3
4,831,908	+		PP_4244	0.78	+1.1
4,831,909	-		PP_4244	0.78	+0.6
4,831,909	-		PP_4244	0.78	+0.5
4,831,909	-		PP_4244	0.78	+0.4
4,832,087	-				+0.3
4,832,087	-				-0.8
4,832,087	-				-0.6
4,832,087	-				-0.6
4,832,089	+				-1.3
4,832,090	-				-1.8
4,832,105	+				+1.0
4,832,143	+				-0.3
4,832,144	-				-0.6
4,832,152	+				+0.6
4,832,153	-				-0.4
4,832,153	-				+0.6
4,832,171	+				-2.4
4,832,172	-				+0.1
4,832,172	-				+0.0
4,832,289	+		PP_4245	0.11	-0.5
4,832,290	-		PP_4245	0.11	+0.7
4,832,364	+		PP_4245	0.18	+0.6
4,832,365	-		PP_4245	0.19	+3.6
4,832,365	-		PP_4245	0.19	+1.7
4,832,434	+		PP_4245	0.25	+0.7
4,832,434	+		PP_4245	0.25	-0.3
4,832,435	-		PP_4245	0.25	+0.4
4,832,435	-		PP_4245	0.25	+2.0
4,832,440	+		PP_4245	0.26	+0.6
4,832,451	+		PP_4245	0.27	+0.8
4,832,467	-		PP_4245	0.29	+0.2
4,832,499	+		PP_4245	0.32	+0.5
4,832,554	+		PP_4245	0.37	+1.9
4,832,554	+		PP_4245	0.37	+2.7
4,832,555	-		PP_4245	0.37	-0.4
4,832,555	-		PP_4245	0.37	-0.9
4,832,584	-		PP_4245	0.40	+0.2
4,832,805	+		PP_4245	0.62	+0.6
4,832,805	+		PP_4245	0.62	-1.3
4,832,807	+		PP_4245	0.62	-1.4
4,832,807	+		PP_4245	0.62	+1.1
4,832,807	+		PP_4245	0.62	-0.7
4,832,874	+		PP_4245	0.69	+0.9
4,832,874	+		PP_4245	0.69	-0.6
4,832,875	-		PP_4245	0.69	+0.5
4,832,988	+		PP_4245	0.80	-0.6
4,832,989	-		PP_4245	0.80	+4.8
4,833,256	-				-0.1
4,833,396	+		PP_4246	0.18	+0.6
4,833,396	+		PP_4246	0.18	-0.5
4,833,397	-		PP_4246	0.18	-2.0
4,833,397	-		PP_4246	0.18	-0.7
4,833,471	+		PP_4246	0.27	-0.8
4,833,472	-		PP_4246	0.27	+0.8
4,833,493	+		PP_4246	0.30	-1.0
4,833,541	-		PP_4246	0.36	-1.4
4,833,558	+		PP_4246	0.38	-0.6
4,833,558	+		PP_4246	0.38	-0.2
4,833,558	+		PP_4246	0.38	+4.6
4,833,559	-		PP_4246	0.38	-1.0
4,833,559	-		PP_4246	0.38	+0.1
4,833,559	-				+1.5
4,833,559	-		PP_4246	0.38	-0.2
4,833,559	-		PP_4246	0.38	-0.6
4,833,559	-		PP_4246	0.38	-0.7
4,833,559	-		PP_4246	0.38	-1.2
4,833,559	-		PP_4246	0.38	-0.9
4,833,573	+		PP_4246	0.40	-0.1
4,833,613	-		PP_4246	0.45	-0.8
4,833,821	-		PP_4246	0.71	-1.3
4,833,826	+		PP_4246	0.71	+1.4
4,833,826	+		PP_4246	0.71	+0.1
4,833,826	+		PP_4246	0.71	+0.8
4,833,827	-		PP_4246	0.72	-0.1
4,833,846	+		PP_4246	0.74	-1.0
4,833,847	-		PP_4246	0.74	-0.1
4,833,847	-		PP_4246	0.74	-1.4
4,833,847	-		PP_4246	0.74	+0.6
4,833,927	+		PP_4246	0.84	-1.3
4,833,927	+		PP_4246	0.84	+0.2
4,834,075	+				+0.0
4,834,075	+				+2.6
4,834,084	-				-0.4
4,834,091	+				-0.3
4,834,092	-				-0.1
4,834,092	-				-1.4
4,834,097	-				+0.0
4,834,123	-				+0.3
4,834,123	-				+0.8
4,834,166	+				+1.0
4,834,166	+				-0.8
4,834,166	+				+2.5