Strain Fitness in Pseudomonas putida KT2440 around PP_4212

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
4,757,265	+		PP_4211	0.38	-1.4
4,757,266	-		PP_4211	0.38	+1.4
4,757,300	+		PP_4211	0.40	-0.2
4,757,303	-		PP_4211	0.41	+1.5
4,757,734	-		PP_4211	0.71	+0.1
4,757,734	-		PP_4211	0.71	+0.5
4,757,736	+		PP_4211	0.71	+1.7
4,757,737	-		PP_4211	0.71	-0.8
4,757,737	-		PP_4211	0.71	+0.0
4,757,872	+		PP_4211	0.81	-0.1
4,757,873	-		PP_4211	0.81	-0.1
4,758,031	-				+0.5
4,758,151	+				-0.2
4,758,152	-				-0.5
4,758,195	+				-0.9
4,758,196	-				+0.6
4,758,221	+				+0.6
4,758,252	+				+0.1
4,758,328	+		PP_4212	0.10	-2.6
4,758,561	+		PP_4212	0.25	+0.1
4,758,562	-		PP_4212	0.25	-0.2
4,758,804	+		PP_4212	0.40	-1.8
4,758,805	-		PP_4212	0.40	+0.0
4,758,820	-		PP_4212	0.41	-1.9
4,758,867	+		PP_4212	0.43	-0.1
4,759,410	-		PP_4212	0.77	-0.5
4,759,642	+				+1.5
4,759,713	+				+0.8
4,759,713	+				-0.3
4,759,714	-				-0.6
4,759,714	-				+0.4
4,759,714	-				+0.1
4,759,790	-				+1.1
4,759,790	-				+0.6
4,759,815	+				+0.8
4,759,816	-				+0.8
4,759,835	+				-0.1
4,759,836	-				+1.7
4,759,934	+				-0.4
4,760,014	+				-0.1
4,760,014	+				+0.2
4,760,014	+				+0.5
4,760,014	+				-1.9
4,760,065	+				-1.0
4,760,416	+		PP_4213	0.34	-0.4
4,760,488	+		PP_4213	0.40	+0.5
4,760,488	+		PP_4213	0.40	-0.3
4,760,488	+		PP_4213	0.40	+0.2