Strain Fitness in Pseudomonas putida KT2440 around PP_3899

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
4,414,060	+		PP_5643	0.74	+0.5
4,414,061	-		PP_5643	0.74	+0.8
4,414,063	+		PP_5643	0.74	-1.3
4,414,064	-		PP_5643	0.74	+3.1
4,414,064	-				+2.3
4,414,125	+		PP_5643	0.80	-0.1
4,414,126	-		PP_5643	0.80	-2.3
4,414,143	-		PP_5643	0.82	-1.9
4,414,148	+		PP_5643	0.82	-0.4
4,414,148	+		PP_5643	0.82	-0.6
4,414,182	-		PP_5643	0.86	+1.0
4,414,190	+		PP_5643	0.87	+0.4
4,414,217	+		PP_5643	0.89	+1.1
4,414,218	-		PP_5643	0.89	+0.3
4,414,218	-		PP_5643	0.89	-0.6
4,414,218	-		PP_5643	0.89	-2.2
4,414,218	-		PP_5643	0.89	-0.3
4,414,218	-		PP_5643	0.89	-0.5
4,414,241	-				+0.0
4,414,241	-				-1.0
4,414,241	-				+0.1
4,414,241	-				+0.6
4,414,342	-				+0.4
4,414,432	-		PP_5644	0.19	+0.9
4,414,437	+		PP_5644	0.20	-0.0
4,414,489	-		PP_5644	0.29	-0.4
4,414,814	+		PP_5644	0.86	+1.1
4,414,863	-				-1.1
4,414,863	-				-1.2
4,414,866	-				-1.3
4,414,869	+				-0.1
4,414,870	-				+1.8
4,414,874	+				-1.5
4,415,018	+				-0.5
4,415,018	+				+0.7
4,415,019	-				+1.3
4,415,078	+				+0.1
4,415,079	-				+0.5
4,415,079	-				-0.6
4,415,150	-		PP_3899	0.27	+2.5
4,415,150	-		PP_3899	0.27	+0.3
4,415,430	+		PP_3900	0.12	+0.8
4,415,431	-		PP_3900	0.12	-0.4
4,415,431	-		PP_3900	0.12	-0.1
4,415,431	-		PP_3900	0.12	+0.0
4,415,433	+		PP_3900	0.13	-0.1
4,415,433	+		PP_3900	0.13	-0.6
4,415,434	-		PP_3900	0.14	-0.7
4,415,445	-		PP_3900	0.18	-1.0
4,415,450	-		PP_3900	0.20	+1.3
4,415,642	+				-2.1
4,415,643	-				+0.1
4,415,643	-				+0.0
4,415,736	+				+0.8
4,415,736	+				+1.5
4,415,737	-				-0.5
4,415,746	+				+0.5
4,415,746	+				+1.0
4,415,747	-				+0.2
4,415,775	-				-1.6
4,415,792	-				-0.2
4,415,792	-				-1.0
4,415,803	+				+0.3
4,415,924	+		PP_3901	0.48	-0.5
4,415,924	+		PP_3901	0.48	-0.0
4,415,924	+		PP_3901	0.48	-0.9
4,415,925	-		PP_3901	0.49	+0.0
4,415,925	-		PP_3901	0.49	+1.0
4,415,994	+		PP_3901	0.75	-2.0
4,415,995	-		PP_3901	0.75	+2.0
4,415,995	-		PP_3901	0.75	+0.1
4,415,995	-		PP_3901	0.75	+0.8
4,415,995	-		PP_3901	0.75	-0.0
4,416,049	-				+0.7
4,416,107	+				+0.9
4,416,126	+				-0.7