Strain Fitness in Pseudomonas putida KT2440 around PP_3888

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
4,405,267	+				+1.0
4,405,267	+				+0.0
4,405,268	-				-0.3
4,405,268	-				+0.7
4,405,268	-				-0.1
4,405,268	-				-0.6
4,405,281	+				+0.8
4,405,282	-				+2.3
4,405,404	+		PP_3886	0.40	-0.6
4,405,625	-		PP_3887	0.12	-0.4
4,405,762	+		PP_3887	0.32	-0.1
4,405,794	+		PP_3887	0.37	-0.7
4,405,794	+		PP_3887	0.37	-0.4
4,405,896	+		PP_3887	0.52	+0.2
4,405,896	+		PP_3887	0.52	-1.9
4,405,897	-		PP_3887	0.53	+1.3
4,405,907	-		PP_3887	0.54	+0.5
4,405,951	+		PP_3887	0.61	+0.1
4,405,952	-		PP_3887	0.61	-1.5
4,405,955	+		PP_3887	0.61	+1.1
4,405,955	+		PP_3887	0.61	+0.3
4,405,993	+		PP_3887	0.67	-1.1
4,405,993	+		PP_3887	0.67	-0.7
4,405,993	+		PP_3887	0.67	-2.2
4,405,994	-		PP_3887	0.67	-0.7
4,405,994	-		PP_3887	0.67	-0.4
4,406,043	+		PP_3887	0.74	+0.3
4,406,044	-		PP_3887	0.74	-0.2
4,406,044	-		PP_3887	0.74	+0.8
4,406,207	+				+0.8
4,406,280	+		PP_3888	0.16	+0.2
4,406,280	+		PP_3888	0.16	-1.3
4,406,282	+		PP_3888	0.17	-1.7
4,406,282	+		PP_3888	0.17	-1.2
4,406,282	+		PP_3888	0.17	-1.7
4,406,386	+		PP_3888	0.49	-1.2
4,406,386	+		PP_3888	0.49	-0.7
4,406,635	+				+0.6
4,406,635	+				-2.0
4,406,741	+		PP_3889	0.15	+0.5
4,406,741	+		PP_3889	0.15	-0.1
4,406,741	+		PP_3889	0.15	+0.4
4,406,741	+		PP_3889	0.15	+0.2
4,406,936	+		PP_3889	0.30	+1.7
4,406,937	-		PP_3889	0.30	-1.9
4,406,948	+		PP_3889	0.31	+0.3
4,406,948	+		PP_3889	0.31	+1.3
4,407,359	+		PP_3889	0.63	+4.0
4,407,402	+		PP_3889	0.66	-0.5
4,407,402	+		PP_3889	0.66	-1.1
4,407,402	+		PP_3889	0.66	-0.8
4,407,425	+		PP_3889	0.68	-0.1
4,407,425	+		PP_3889	0.68	-0.9
4,407,425	+		PP_3889	0.68	+0.8
4,407,426	-		PP_3889	0.68	-0.3
4,407,426	-		PP_3889	0.68	-0.7
4,407,445	+		PP_3889	0.69	-1.9
4,407,446	-		PP_3889	0.69	-0.8
4,407,492	+		PP_3889	0.73	-0.8
4,407,492	+		PP_3889	0.73	-0.1
4,407,492	+		PP_3889	0.73	+2.6
4,407,493	-		PP_3889	0.73	-0.7
4,407,493	-		PP_3889	0.73	+0.4
4,407,493	-		PP_3889	0.73	+0.7
4,407,536	+		PP_3889	0.76	+0.3
4,407,536	+		PP_3889	0.76	-0.4
4,407,536	+				-0.2
4,407,537	-		PP_3889	0.76	+0.2