Strain Fitness in Pseudomonas putida KT2440 around PP_2647

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,032,965	+		PP_2645	0.82	-0.8
3,032,965	+		PP_2645	0.82	-1.6
3,032,965	+		PP_2645	0.82	+0.7
3,032,966	-		PP_2645	0.82	-1.1
3,033,071	+		PP_2645	0.86	+0.5
3,033,079	-		PP_2645	0.86	-1.0
3,033,122	-		PP_2645	0.88	+0.5
3,033,144	-		PP_2645	0.89	-1.3
3,033,144	-		PP_2645	0.89	+1.0
3,033,207	-				+1.7
3,033,207	-				-0.8
3,033,270	-				+1.0
3,033,300	+				+0.6
3,033,304	+				-0.0
3,033,304	+				+0.2
3,033,304	+				+0.1
3,033,305	-				-0.6
3,033,361	+				+0.4
3,033,362	-				+0.6
3,033,394	+				+0.1
3,033,395	-				+0.3
3,033,395	-				-0.2
3,033,427	+				+1.6
3,033,427	+				+0.6
3,033,427	+				+0.5
3,033,428	-				+0.3
3,033,428	-				+0.2
3,033,428	-				+3.2
3,033,429	+				+0.2
3,033,491	+				-0.6
3,033,491	+				-0.1
3,033,492	-				-0.4
3,033,508	+		PP_2646	0.12	-0.2
3,033,509	-		PP_2646	0.12	+0.0
3,033,811	+		PP_2646	0.89	+0.8
3,033,812	-		PP_2646	0.89	-1.0
3,033,854	-				+0.2
3,033,854	-				-0.1
3,033,874	+				-0.2
3,033,879	+				-0.1
3,033,880	-				+1.4
3,033,880	-				-0.3
3,033,886	-				-0.6
3,034,075	+				+1.8
3,034,075	+				+3.2
3,034,075	+				+0.8
3,034,076	-				-0.9
3,034,076	-				+0.4
3,034,232	+				-0.1
3,034,232	+		PP_2647	0.22	-0.6
3,034,392	+		PP_2647	0.35	-1.1
3,034,392	+		PP_2647	0.35	+0.7
3,034,418	-		PP_2647	0.37	-0.2
3,034,461	+		PP_2647	0.41	-0.4
3,034,461	+		PP_2647	0.41	-1.0
3,034,461	+		PP_2647	0.41	-0.1
3,034,461	+		PP_2647	0.41	+0.0
3,034,462	-		PP_2647	0.41	-1.6
3,034,467	+		PP_2647	0.41	-0.3
3,034,468	-		PP_2647	0.41	-1.0
3,034,619	+		PP_2647	0.54	-1.3
3,034,625	+		PP_2647	0.54	-1.5
3,034,625	+		PP_2647	0.54	-0.3
3,034,626	-		PP_2647	0.54	-0.1
3,034,813	+		PP_2647	0.69	-1.2
3,034,814	-		PP_2647	0.69	-1.6
3,034,920	+		PP_2647	0.78	-0.7
3,034,921	-		PP_2647	0.78	-1.1
3,035,052	-		PP_2647	0.89	-0.9
3,035,219	-				-0.0
3,035,255	+				+0.2
3,035,297	+				+0.7
3,035,297	+				-0.4
3,035,330	+				+0.3
3,035,482	+				-0.8
3,035,490	+				+0.7
3,035,490	+				-0.4
3,035,521	-				-0.5
3,035,704	-		PP_2648	0.24	-0.8
3,036,108	-		PP_2648	0.67	-0.4
3,036,112	+		PP_2648	0.68	+3.0