Strain Fitness in Pseudomonas putida KT2440 around PP_2620

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
2,994,858	+		PP_2618	0.49	+1.7
2,994,956	+		PP_2618	0.61	-0.6
2,994,961	-		PP_2618	0.62	+0.6
2,994,996	+		PP_2618	0.66	-0.3
2,995,269	-				-1.3
2,995,520	+		PP_2619	0.45	-0.4
2,995,520	+		PP_2619	0.45	-0.9
2,995,521	-		PP_2619	0.46	-0.1
2,995,539	-		PP_2619	0.49	-1.2
2,995,543	-				+1.0
2,995,543	-		PP_2619	0.49	-0.1
2,995,624	-		PP_2619	0.64	-1.5
2,995,624	-		PP_2619	0.64	-0.5
2,995,776	+				+0.8
2,995,904	-				-0.6
2,995,972	+		PP_2620	0.14	+3.4
2,995,973	-		PP_2620	0.14	-1.0
2,995,973	-		PP_2620	0.14	+0.4
2,996,260	-		PP_2620	0.43	+0.1
2,996,422	+		PP_2620	0.59	+1.2
2,996,422	+		PP_2620	0.59	+1.0
2,996,422	+		PP_2620	0.59	-1.4
2,996,422	+		PP_2620	0.59	+1.5
2,996,422	+		PP_2620	0.59	-0.8
2,996,425	+		PP_2620	0.59	-0.0
2,996,425	+		PP_2620	0.59	-1.3
2,996,431	+		PP_2620	0.59	+3.3
2,996,431	+				-0.1
2,996,444	+		PP_2620	0.61	+0.2
2,996,468	-		PP_2620	0.63	+1.6
2,996,468	-		PP_2620	0.63	-0.8
2,996,543	-		PP_2620	0.70	+0.1
2,996,545	+		PP_2620	0.71	+0.5
2,996,546	-		PP_2620	0.71	+0.5
2,996,638	+		PP_2620	0.80	+1.3
2,996,639	-		PP_2620	0.80	-0.1
2,996,777	-				-1.5
2,996,808	+				+1.2
2,996,834	+				-1.9
2,996,835	-				+2.6
2,996,848	-				-0.8
2,996,848	-				-1.4
2,996,907	+				+0.4
2,996,946	+				-1.1
2,996,946	+				-0.0
2,996,947	-				+0.7
2,997,046	+		PP_2621	0.14	+2.3
2,997,047	-		PP_2621	0.14	-0.1
2,997,047	-		PP_2621	0.14	-0.8
2,997,061	+		PP_2621	0.14	-0.8
2,997,171	+		PP_2621	0.21	+0.8
2,997,171	+		PP_2621	0.21	-1.4
2,997,172	-		PP_2621	0.21	+1.0
2,997,172	-		PP_2621	0.21	-0.8
2,997,172	-		PP_2621	0.21	-1.0
2,997,172	-		PP_2621	0.21	-1.6
2,997,172	-		PP_2621	0.21	-1.2
2,997,247	+		PP_2621	0.25	+0.2
2,997,261	+		PP_2621	0.26	-0.9
2,997,261	+		PP_2621	0.26	+0.4
2,997,261	+				+0.0
2,997,281	-		PP_2621	0.27	-1.5
2,997,377	+				+1.0
2,997,378	-		PP_2621	0.32	-0.6
2,997,381	+		PP_2621	0.32	-0.6
2,997,382	-		PP_2621	0.33	-0.8
2,997,465	+		PP_2621	0.37	+0.2
2,997,550	+		PP_2621	0.42	-2.9
2,997,550	+		PP_2621	0.42	+0.6
2,997,782	+		PP_2621	0.55	-0.3