Strain Fitness in Pseudomonas putida KT2440 around PP_2592

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
2,961,233	-				-1.3
2,961,233	-				-0.9
2,961,302	-				-1.0
2,961,433	+		PP_2591	0.20	-0.3
2,961,434	-		PP_2591	0.20	-1.2
2,961,434	-				-0.4
2,961,434	-		PP_2591	0.20	-0.9
2,961,434	-		PP_2591	0.20	-1.0
2,961,766	+		PP_2591	0.52	-1.2
2,961,927	-		PP_2591	0.68	+1.2
2,961,927	-		PP_2591	0.68	+0.3
2,961,927	-		PP_2591	0.68	+0.0
2,961,928	+		PP_2591	0.68	-1.0
2,961,928	+		PP_2591	0.68	-0.3
2,962,074	+		PP_2591	0.82	+0.9
2,962,075	-		PP_2591	0.83	+0.8
2,962,090	+		PP_2591	0.84	-0.5
2,962,090	+		PP_2591	0.84	+1.4
2,962,091	-		PP_2591	0.84	-1.0
2,962,180	-				+0.6
2,962,246	-				-1.6
2,962,600	-		PP_2592	0.49	-1.7
2,962,777	-		PP_2592	0.72	-1.1
2,962,777	-		PP_2592	0.72	+0.0
2,962,820	+		PP_2592	0.78	-1.1
2,962,820	+		PP_2592	0.78	-0.5
2,962,962	+				-0.2
2,962,987	+				+3.6
2,962,988	-				-1.5
2,963,030	+				-0.1
2,963,030	+				-1.6
2,963,031	-				-0.0
2,963,031	-				+2.1
2,963,031	-				+0.3
2,963,075	+				-0.5
2,963,183	+		PP_2593	0.20	-1.3
2,963,184	-		PP_2593	0.21	-0.5
2,963,294	+		PP_2593	0.32	+0.9
2,963,295	-		PP_2593	0.32	-2.3
2,963,295	-		PP_2593	0.32	-0.6
2,963,552	+		PP_2593	0.60	+2.3
2,963,553	-		PP_2593	0.60	-1.2
2,963,617	+		PP_2593	0.67	+1.5
2,963,617	+		PP_2593	0.67	+0.2
2,963,618	-				-1.2
2,963,709	-		PP_2593	0.76	+1.0
2,963,721	-		PP_2593	0.78	-1.2
2,963,847	-				+0.8
2,963,847	-				-0.5