Strain Fitness in Pseudomonas putida KT2440 around PP_2511

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
2,857,810	+				+0.2
2,857,847	-				-0.1
2,857,851	+				+0.2
2,857,852	-				-1.0
2,857,920	-				+0.0
2,857,941	+				-2.2
2,857,954	+				+0.3
2,857,955	-				-0.5
2,858,026	-				+1.5
2,858,026	-				-0.9
2,858,046	-				+0.2
2,858,134	-				+0.0
2,858,201	-				+0.0
2,858,287	+				+0.5
2,858,287	+				-0.6
2,858,287	+				+0.8
2,858,288	-				+1.5
2,858,288	-				-0.7
2,858,297	+				-0.2
2,858,298	-				-0.5
2,858,304	-				-1.5
2,858,468	+		PP_2510	0.31	-0.4
2,858,468	+		PP_2510	0.31	-0.5
2,858,639	+				-0.6
2,858,731	-				+1.3
2,858,736	-				+1.5
2,858,736	-				-0.1
2,858,749	+				-0.5
2,858,773	+				+0.4
2,858,774	-				-0.8
2,858,797	+				-0.3
2,858,835	-		PP_2511	0.16	+0.3
2,858,835	-		PP_2511	0.16	-0.0
2,859,059	+		PP_2511	0.70	+2.2
2,859,060	-		PP_2511	0.70	+3.1
2,859,192	+				-0.7
2,859,193	-				+1.4
2,859,279	+		PP_2512	0.20	+1.2
2,859,279	+		PP_2512	0.20	+0.6
2,859,280	-		PP_2512	0.20	+0.8
2,859,436	-		PP_2512	0.48	+0.3
2,859,436	-		PP_2512	0.48	-0.2
2,859,457	+		PP_2512	0.52	+1.0
2,859,458	-		PP_2512	0.52	+0.5
2,859,458	-		PP_2512	0.52	+1.8
2,859,458	-		PP_2512	0.52	+1.2
2,859,488	+		PP_2512	0.57	+1.7
2,859,488	+		PP_2512	0.57	+0.9
2,859,489	-		PP_2512	0.57	-0.4
2,859,489	-		PP_2512	0.57	+3.4
2,859,506	-		PP_2512	0.60	+1.4
2,859,512	-		PP_2512	0.61	-0.8
2,859,599	+		PP_2512	0.77	-0.8
2,859,599	+		PP_2512	0.77	+0.9
2,859,599	+		PP_2512	0.77	-0.7
2,859,599	+		PP_2512	0.77	+0.7
2,859,600	-		PP_2512	0.77	+1.4
2,859,600	-		PP_2512	0.77	+0.7
2,859,600	-		PP_2512	0.77	-1.1
2,859,600	-		PP_2512	0.77	-1.3
2,859,600	-		PP_2512	0.77	-0.2
2,859,661	+		PP_2512	0.88	-1.2
2,859,778	+				-0.9
2,859,779	-				-0.2
2,859,779	-				-0.5
2,859,787	-				+1.1
2,859,787	-				-0.3
2,859,815	+		PP_5535	0.11	+1.0
2,859,836	-		PP_5535	0.16	+1.3
2,860,012	+		PP_5535	0.54	+0.5
2,860,012	+		PP_5535	0.54	-0.5
2,860,012	+		PP_5535	0.54	+1.3
2,860,013	-		PP_5535	0.54	-1.1
2,860,014	+		PP_5535	0.54	-0.4
2,860,015	-		PP_5535	0.55	+2.3
2,860,015	-		PP_5535	0.55	-1.1
2,860,015	-		PP_5535	0.55	+0.5
2,860,139	+		PP_5535	0.82	-0.4
2,860,139	+		PP_5535	0.82	-0.6