Strain Fitness in Pseudomonas putida KT2440 around PP_2509

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
2,855,578	-		PP_5533	0.18	-0.4
2,855,783	-				-0.9
2,855,807	+				-0.1
2,855,808	-				-0.5
2,855,808	-				+1.5
2,855,808	-				-0.1
2,855,845	+				+0.5
2,855,903	-				-0.4
2,856,173	+				-1.1
2,856,173	+				-0.5
2,856,173	+				-1.0
2,856,174	-				+0.5
2,856,174	-				-0.3
2,856,422	+		PP_5534	0.35	-0.1
2,856,422	+		PP_5534	0.35	-0.3
2,856,422	+		PP_5534	0.35	-1.3
2,856,423	-		PP_5534	0.36	+1.3
2,856,423	-		PP_5534	0.36	+1.2
2,856,423	-		PP_5534	0.36	+0.6
2,856,423	-		PP_5534	0.36	-0.9
2,856,423	-		PP_5534	0.36	-0.1
2,856,423	-		PP_5534	0.36	+0.4
2,856,470	-		PP_5534	0.56	-1.8
2,856,470	-		PP_5534	0.56	+0.2
2,856,470	-		PP_5534	0.56	+0.4
2,856,569	-				-0.6
2,856,576	+				+0.9
2,856,577	-				-1.6
2,856,577	-				-1.6
2,856,653	+		PP_2509	0.52	+0.7
2,856,654	-		PP_2509	0.53	+1.4
2,856,654	-		PP_2509	0.53	-0.3
2,856,658	-		PP_2509	0.55	+0.6
2,856,742	-				+1.6
2,856,742	-				-1.1
2,856,742	-				+0.7
2,856,770	+				+0.9
2,856,771	-				-0.2
2,856,771	-				-0.2
2,856,775	-				+0.3
2,856,798	+				+1.0
2,856,798	+				-0.7
2,856,798	+				+1.6
2,856,799	-				+1.0
2,856,799	-				-1.5
2,856,799	-				-0.1
2,856,799	-				+0.3
2,856,799	-				-0.1
2,856,799	-				+2.3
2,856,799	-				+0.4
2,856,811	+				-0.2
2,856,812	-				-0.0
2,856,812	-				-0.1
2,856,827	-				+0.5
2,856,912	-				-0.2
2,856,923	+				+0.7
2,856,923	+				+2.7
2,856,923	+				-0.5
2,856,924	-				+0.0
2,856,966	+				-1.2
2,856,967	-				-1.2
2,856,967	-				+0.7
2,857,099	-				+0.6
2,857,131	+				-0.8
2,857,167	-				-0.1
2,857,170	+				+1.0
2,857,171	-				+0.5
2,857,190	-				-0.0
2,857,229	+				-2.0
2,857,355	-				-0.5
2,857,388	+				-0.5
2,857,389	-				+0.4
2,857,389	-				-0.4
2,857,483	+				+2.1
2,857,483	+				+0.2
2,857,484	-				-1.0
2,857,524	+				+0.2
2,857,552	+				-2.0
2,857,564	+				+2.7
2,857,662	+				-0.3
2,857,686	+				+0.9