Strain Fitness in Pseudomonas putida KT2440 around PP_2365

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
2,697,527	+		PP_2364	0.33	-0.5
2,697,527	+		PP_2364	0.33	+0.2
2,697,527	+		PP_2364	0.33	-1.0
2,697,528	-		PP_2364	0.33	-0.0
2,697,528	-		PP_2364	0.33	-1.4
2,697,950	+		PP_2364	0.70	-0.8
2,698,003	-		PP_2364	0.74	-0.4
2,698,047	-		PP_2364	0.78	-0.2
2,698,086	-		PP_2364	0.82	-0.1
2,698,086	-		PP_2364	0.82	-1.4
2,698,169	+		PP_2364	0.89	+3.1
2,698,208	-				-0.9
2,698,234	+				-1.2
2,698,235	-				+0.0
2,698,235	-				-0.1
2,698,240	+				+0.7
2,698,240	+				-1.1
2,698,241	-				+0.8
2,698,241	-				-1.0
2,698,256	-				-0.5
2,698,326	-				+1.4
2,698,331	+				-1.2
2,698,332	-				+0.2
2,698,336	+				+0.3
2,698,336	+				-0.9
2,698,336	+				-1.8
2,698,336	+				-0.1
2,698,336	+				-0.6
2,698,337	-				+0.1
2,698,337	-				-0.1
2,698,337	-				+0.2
2,698,337	-				-0.3
2,698,338	+				-0.6
2,698,338	+				+0.0
2,698,338	+				-0.5
2,698,511	+				-0.5
2,698,512	-				+0.4
2,698,780	+		PP_2365	0.44	-0.8
2,699,081	+		PP_2365	0.83	-2.9
2,699,081	+		PP_2365	0.83	-2.1
2,699,082	-		PP_2365	0.83	-1.8
2,699,082	-		PP_2365	0.83	-1.2
2,699,082	-		PP_2365	0.83	+0.1
2,699,082	-		PP_2365	0.83	+0.9
2,699,106	+		PP_2365	0.86	-1.6
2,699,106	+		PP_2365	0.86	-0.6
2,699,107	-		PP_2365	0.86	-0.4
2,699,136	-				+0.6
2,699,206	+				-3.1
2,699,222	+				+0.5
2,699,223	-				+1.0
2,699,249	+				-0.1
2,699,339	+				-0.2
2,699,340	-				-0.5
2,699,471	+		PP_2366	0.18	+0.6
2,699,472	-		PP_2366	0.18	-0.9
2,699,472	-		PP_2366	0.18	-0.2
2,699,684	+		PP_2366	0.35	-0.4
2,699,684	+		PP_2366	0.35	+0.8
2,699,684	+		PP_2366	0.35	+0.3
2,699,685	-		PP_2366	0.35	-0.9
2,699,685	-		PP_2366	0.35	+0.4
2,699,730	-		PP_2366	0.38	+0.2
2,699,762	+		PP_2366	0.41	+0.5
2,699,763	-		PP_2366	0.41	-1.3
2,699,906	-		PP_2366	0.52	+0.2
2,699,974	-		PP_2366	0.57	+0.9
2,700,045	+		PP_2366	0.63	-0.5
2,700,149	+		PP_2366	0.71	+0.9
2,700,150	-		PP_2366	0.71	-0.5
2,700,150	-		PP_2366	0.71	+1.6
2,700,150	-		PP_2366	0.71	+0.4
2,700,150	-		PP_2366	0.71	-0.5
2,700,150	-		PP_2366	0.71	-0.5
2,700,208	+		PP_2366	0.76	-0.3
2,700,209	-				+2.2