Strain Fitness in Pseudomonas putida KT2440 around PP_2068

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
2,352,384	+		PP_2067	0.42	-1.5
2,352,384	+		PP_2067	0.42	+0.9
2,352,385	-		PP_2067	0.42	-1.8
2,352,463	-		PP_2067	0.47	-0.8
2,352,754	-				+1.3
2,352,774	+		PP_2067	0.68	-2.9
2,352,775	-		PP_2067	0.68	-1.7
2,352,948	-		PP_2067	0.79	+0.4
2,353,295	+				+1.4
2,353,295	+				+1.6
2,353,295	+				+0.2
2,353,295	+				+0.9
2,353,296	-				+1.7
2,353,320	+				+0.3
2,353,497	+		PP_2068	0.19	-1.0
2,353,497	+		PP_2068	0.19	-0.3
2,353,498	-		PP_2068	0.19	+0.3
2,353,498	-		PP_2068	0.19	-2.6
2,353,498	-		PP_2068	0.19	+1.6
2,353,546	+		PP_2068	0.23	+0.4
2,353,546	+		PP_2068	0.23	+0.7
2,353,547	-		PP_2068	0.23	+0.3
2,353,558	-		PP_2068	0.24	+0.2
2,353,561	+		PP_2068	0.24	+1.0
2,353,561	+		PP_2068	0.24	-0.3
2,353,562	-		PP_2068	0.24	+0.1
2,353,562	-		PP_2068	0.24	-0.0
2,353,562	-		PP_2068	0.24	-0.0
2,353,612	+		PP_2068	0.28	+1.8
2,353,612	+		PP_2068	0.28	-1.2
2,353,613	-		PP_2068	0.28	-0.5
2,353,913	-		PP_2068	0.52	-1.8
2,354,175	+		PP_2068	0.72	-0.8
2,354,175	+		PP_2068	0.72	-0.3
2,354,176	-		PP_2068	0.72	-0.7
2,354,176	-		PP_2068	0.72	+0.2
2,354,179	+				+1.5
2,354,180	-		PP_2068	0.72	+2.7
2,354,225	-		PP_2068	0.76	+0.3
2,354,225	-		PP_2068	0.76	-0.9
2,354,225	-		PP_2068	0.76	-0.3
2,354,343	-		PP_2068	0.85	+1.2
2,354,552	+				-0.4
2,354,622	+				+0.5
2,354,623	-				-2.0
2,354,731	+				-0.8
2,354,732	-		PP_2069	0.10	-0.4
2,354,732	-		PP_2069	0.10	-0.6
2,354,735	+		PP_2069	0.10	-0.5
2,354,736	-		PP_2069	0.10	-1.5
2,354,870	-		PP_2069	0.20	-0.4
2,355,081	+		PP_2069	0.35	-0.4
2,355,081	+		PP_2069	0.35	+0.1
2,355,081	+		PP_2069	0.35	+0.9
2,355,189	+		PP_2069	0.42	-0.8
2,355,427	+		PP_2069	0.59	-0.0
2,355,445	+		PP_2069	0.60	+0.2
2,355,446	-		PP_2069	0.60	+1.1
2,355,489	+		PP_2069	0.63	-0.2
2,355,490	-		PP_2069	0.63	-1.4