Strain Fitness in Pseudomonas putida KT2440 around PP_1413

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
1,611,340	+		PP_1412	0.33	+1.3
1,611,436	+		PP_1412	0.42	+0.4
1,611,437	-		PP_1412	0.42	-0.1
1,611,437	-		PP_1412	0.42	+0.2
1,611,437	-		PP_1412	0.42	+0.6
1,611,437	-		PP_1412	0.42	+0.1
1,611,632	+		PP_1412	0.60	+0.1
1,611,688	+		PP_1412	0.65	-0.0
1,611,688	+		PP_1412	0.65	-0.3
1,611,688	+		PP_1412	0.65	+0.2
1,611,688	+		PP_1412	0.65	+0.3
1,611,688	+		PP_1412	0.65	-0.0
1,611,688	+		PP_1412	0.65	+0.2
1,611,689	-		PP_1412	0.65	-0.1
1,611,689	-		PP_1412	0.65	+0.1
1,611,689	-		PP_1412	0.65	+0.3
1,612,082	+				-0.5
1,612,082	+				-1.1
1,612,082	+				+0.7
1,612,082	+				-0.0
1,612,107	+				-0.8
1,612,107	+				+1.0
1,612,107	+				+1.9
1,612,107	+				-0.0
1,612,108	-				+0.3
1,612,108	-				-1.5
1,612,108	-				-0.7
1,612,169	+				-1.6
1,612,170	-				+0.2
1,612,170	-				-1.0
1,612,170	-				-0.3
1,612,174	-				+1.1
1,612,191	+				-0.4
1,612,276	+		PP_1413	0.10	-0.1
1,612,276	+		PP_1413	0.10	+0.6
1,612,276	+		PP_1413	0.10	+0.5
1,612,276	+		PP_1413	0.10	-0.3
1,612,276	+		PP_1413	0.10	-0.3
1,612,276	+		PP_1413	0.10	-2.1
1,612,277	-		PP_1413	0.11	+0.1
1,612,334	-		PP_1413	0.19	+1.2
1,612,418	-		PP_1413	0.31	-0.2
1,612,495	-		PP_1413	0.42	-1.1
1,612,498	+		PP_1413	0.42	+0.0
1,612,498	+		PP_1413	0.42	+0.1
1,612,499	-		PP_1413	0.43	-2.4
1,612,499	-		PP_1413	0.43	+1.8
1,612,651	-		PP_1413	0.65	+0.5
1,612,706	+		PP_1413	0.72	-0.7
1,612,706	+		PP_1413	0.72	+0.4
1,612,749	+		PP_1413	0.79	-0.9
1,612,798	+		PP_1413	0.86	-0.1
1,612,799	-		PP_1413	0.86	-0.2
1,612,997	-				+0.3
1,612,997	-				+0.1
1,613,200	+		PP_1414	0.16	+0.4
1,613,201	-		PP_1414	0.17	+1.0
1,613,217	+		PP_1414	0.17	+0.1
1,613,217	+		PP_1414	0.17	+0.1
1,613,217	+		PP_1414	0.17	+0.7
1,613,218	-		PP_1414	0.18	+0.1
1,613,322	+		PP_1414	0.24	-0.6
1,613,322	+		PP_1414	0.24	-0.8
1,613,331	+		PP_1414	0.24	-1.7
1,613,331	+				+1.8
1,613,341	+		PP_1414	0.25	+0.0
1,613,341	+		PP_1414	0.25	-0.3
1,613,342	-		PP_1414	0.25	-0.5
1,613,342	-		PP_1414	0.25	+0.5
1,613,342	-		PP_1414	0.25	-1.5
1,613,370	-		PP_1414	0.27	-0.8
1,613,523	+		PP_1414	0.36	-0.4
1,613,599	+				-0.9
1,613,599	+		PP_1414	0.40	+1.2
1,613,600	-		PP_1414	0.40	+0.9
1,613,600	-		PP_1414	0.40	-0.3
1,613,622	-		PP_1414	0.42	+0.9
1,613,743	+		PP_1414	0.49	-0.2
1,613,743	+		PP_1414	0.49	+0.8
1,613,743	+		PP_1414	0.49	-1.9
1,613,743	+		PP_1414	0.49	+1.6
1,613,744	-		PP_1414	0.49	-1.6
1,613,744	-		PP_1414	0.49	+0.5
1,613,778	+		PP_1414	0.51	-0.4
1,613,778	+		PP_1414	0.51	+0.3
1,613,779	-		PP_1414	0.51	-0.0
1,613,823	+		PP_1414	0.53	-0.3
1,613,823	+		PP_1414	0.53	-0.2
1,613,824	-		PP_1414	0.54	+0.3
1,613,824	-		PP_1414	0.54	-0.8
1,613,824	-		PP_1414	0.54	-1.3
1,613,824	-		PP_1414	0.54	-0.1
1,613,824	-		PP_1414	0.54	-0.1
1,613,824	-		PP_1414	0.54	+0.0