Strain Fitness in Pseudomonas putida KT2440 around PP_1317

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
1,504,099	-				-0.3
1,504,131	+				+1.0
1,504,131	+				-1.3
1,504,137	+				-0.3
1,504,137	+				+0.5
1,504,138	-				-2.2
1,504,138	-				+0.3
1,504,175	+				+0.4
1,504,208	-				-0.7
1,504,208	-				-1.7
1,504,245	+				-0.6
1,504,245	+				-1.5
1,504,245	+				+1.8
1,504,245	+				+0.5
1,504,245	+				+0.8
1,504,246	-				-1.1
1,504,246	-				-0.4
1,504,246	-				-1.0
1,504,511	-		PP_1317	0.36	-2.2
1,504,608	+		PP_1317	0.53	-0.5
1,504,609	-		PP_1317	0.53	-1.0
1,504,609	-		PP_1317	0.53	-2.1
1,504,735	+		PP_1317	0.74	-1.0
1,504,735	+		PP_1317	0.74	-0.4
1,504,736	-		PP_1317	0.74	-1.4
1,504,736	-		PP_1317	0.74	-2.6
1,504,743	+		PP_1317	0.75	-0.8
1,504,770	+		PP_1317	0.80	-1.4
1,504,791	+		PP_1317	0.83	-0.4
1,504,791	+		PP_1317	0.83	-0.6
1,504,792	-		PP_1317	0.84	-2.0
1,504,839	+				-0.8
1,504,839	+				+0.5
1,504,840	-				-0.8
1,504,961	+				-1.3
1,504,961	+				-0.1
1,504,961	+				-1.5
1,504,961	+				+0.5
1,504,962	-				+1.7
1,504,962	-				+0.2
1,504,962	-				-0.8
1,504,964	+				-1.5
1,504,964	+				+1.8
1,504,964	+				-1.2
1,504,965	-				-0.5
1,505,102	+		PP_1318	0.18	+0.3
1,505,103	-		PP_1318	0.18	-0.1
1,505,124	-		PP_1318	0.19	+0.6
1,505,184	-		PP_1318	0.24	-1.4
1,505,210	+		PP_1318	0.26	-2.3
1,505,211	-		PP_1318	0.27	-0.8
1,505,264	+		PP_1318	0.31	-0.6
1,505,297	+		PP_1318	0.34	-2.1
1,505,297	+		PP_1318	0.34	-1.0
1,505,324	+		PP_1318	0.36	+3.1
1,505,324	+		PP_1318	0.36	+0.2
1,505,325	-		PP_1318	0.36	-0.2
1,505,408	+		PP_1318	0.43	-0.9
1,505,408	+		PP_1318	0.43	-2.6
1,505,409	-		PP_1318	0.43	+0.2
1,505,587	+		PP_1318	0.58	-2.7
1,505,603	+		PP_1318	0.59	+0.0
1,505,603	+		PP_1318	0.59	-1.8
1,505,604	-		PP_1318	0.59	-1.9
1,505,606	+		PP_1318	0.59	-1.4
1,505,607	-		PP_1318	0.59	-2.3
1,505,607	-		PP_1318	0.59	-1.4
1,505,690	+		PP_1318	0.66	-1.4
1,505,690	+		PP_1318	0.66	-0.4
1,505,778	-		PP_1318	0.73	-2.6
1,505,778	-		PP_1318	0.73	-2.3