Strain Fitness in Pseudomonas putida KT2440 around PP_1178

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
1,351,923	-				-1.1
1,351,962	-				-0.5
1,351,962	-				+0.7
1,351,962	-				+0.3
1,351,962	-				-0.1
1,352,105	+				-0.9
1,352,116	+				-0.4
1,352,116	+				-1.0
1,352,117	-				+0.0
1,352,117	-				+0.5
1,352,117	-				+0.5
1,352,118	+				-1.9
1,352,118	+				-0.2
1,352,119	-				-1.0
1,352,119	-				-0.8
1,352,119	-				+0.3
1,352,119	-				+0.0
1,352,119	-				-0.7
1,352,119	-				-0.4
1,352,152	+				-1.5
1,352,152	+				-0.9
1,352,152	+				+0.8
1,352,152	+				-0.6
1,352,152	+				-0.7
1,352,152	+				+0.1
1,352,152	+				-0.2
1,352,153	-				+0.0
1,352,153	-				-0.2
1,352,153	-				+1.7
1,352,153	-				+1.0
1,352,153	-				-0.0
1,352,153	-				+2.0
1,352,153	-				+0.0
1,352,153	-				+0.2
1,352,153	-				+1.2
1,352,227	+				+0.0
1,352,227	+				-1.2
1,352,228	-				-3.3
1,352,231	+				+0.6
1,352,231	+				+0.8
1,352,231	+				-0.3
1,352,231	+				-0.1
1,352,231	+				+0.4
1,352,232	-				+0.3
1,352,232	-				-1.0
1,352,232	-				+2.3
1,352,242	+		PP_1178	0.12	-1.5
1,352,242	+		PP_1178	0.12	+0.6
1,352,243	-		PP_1178	0.13	-1.0
1,352,243	-		PP_1178	0.13	-2.0
1,352,363	+				-0.5
1,352,363	+				-1.3
1,352,363	+				+1.2
1,352,363	+				-0.2
1,352,363	+				-0.4
1,352,364	-				+0.2
1,352,364	-				-0.3
1,352,364	-				-0.2
1,352,364	-				+0.2
1,352,364	-				-0.2
1,352,364	-				+1.0
1,352,364	-				-1.0