Strain Fitness in Pseudomonas putida KT2440 around PP_0869

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0868 and PP_0869 overlap by 4 nucleotidesPP_0869 and PP_0870 overlap by 4 nucleotidesPP_0870 and PP_0871 overlap by 17 nucleotides PP_0868: PP_0868 - ABC transporter ATP-binding subunit, at 1,007,590 to 1,008,747 _0868 PP_0869: PP_0869 - osmoprotectant ABC transporter permease subunit, at 1,008,744 to 1,009,397 _0869 PP_0870: PP_0870 - putative Glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein, at 1,009,394 to 1,010,335 _0870 PP_0871: PP_0871 - putative Glycine betaine/carnitine/choline ABC transporter, permease protein, at 1,010,319 to 1,011,062 _0871 Position (kb) 1008 1009 1010Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1007.745 kb on - strand, within PP_0868at 1007.745 kb on - strand, within PP_0868at 1007.745 kb on - strand, within PP_0868at 1007.858 kb on + strand, within PP_0868at 1007.858 kb on + strand, within PP_0868at 1008.170 kb on - strand, within PP_0868at 1008.353 kb on + strand, within PP_0868at 1008.447 kb on + strand, within PP_0868at 1008.448 kb on - strand, within PP_0868at 1008.448 kb on - strand, within PP_0868at 1008.448 kb on - strand, within PP_0868at 1008.500 kb on + strand, within PP_0868at 1008.501 kb on - strand, within PP_0868at 1008.522 kb on + strand, within PP_0868at 1008.828 kb on + strand, within PP_0869at 1008.829 kb on - strand, within PP_0869at 1008.875 kb on + strand, within PP_0869at 1008.876 kb on - strand, within PP_0869at 1008.876 kb on - strand, within PP_0869at 1009.081 kb on + strand, within PP_0869at 1009.111 kb on + strand, within PP_0869at 1009.111 kb on + strand, within PP_0869at 1009.403 kb on + strandat 1009.404 kb on - strandat 1009.404 kb on - strandat 1009.605 kb on + strand, within PP_0870at 1009.831 kb on + strand, within PP_0870at 1009.831 kb on + strand, within PP_0870at 1009.832 kb on - strand, within PP_0870at 1009.832 kb on - strand, within PP_0870at 1009.926 kb on + strand, within PP_0870at 1009.926 kb on + strand, within PP_0870at 1009.927 kb on - strand, within PP_0870at 1009.927 kb on - strand, within PP_0870at 1009.927 kb on - strand, within PP_0870at 1009.927 kb on - strand, within PP_0870at 1009.927 kb on - strand, within PP_0870at 1009.998 kb on + strand, within PP_0870at 1009.999 kb on - strand, within PP_0870at 1010.020 kb on + strand, within PP_0870at 1010.020 kb on + strand, within PP_0870at 1010.021 kb on - strand, within PP_0870at 1010.041 kb on - strand, within PP_0870at 1010.065 kb on - strand, within PP_0870at 1010.167 kb on - strand, within PP_0870at 1010.321 kb on - strandat 1010.321 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.001 mg/ml
remove
1,007,745 - PP_0868 0.13 +0.8
1,007,745 - PP_0868 0.13 +0.2
1,007,745 - PP_0868 0.13 -1.9
1,007,858 + PP_0868 0.23 +0.2
1,007,858 + PP_0868 0.23 -0.5
1,008,170 - PP_0868 0.50 -0.4
1,008,353 + PP_0868 0.66 -1.2
1,008,447 + PP_0868 0.74 -0.5
1,008,448 - PP_0868 0.74 -0.2
1,008,448 - PP_0868 0.74 -0.7
1,008,448 - PP_0868 0.74 -0.3
1,008,500 + PP_0868 0.79 -0.1
1,008,501 - PP_0868 0.79 +2.3
1,008,522 + PP_0868 0.80 -1.8
1,008,828 + PP_0869 0.13 -1.4
1,008,829 - PP_0869 0.13 -0.9
1,008,875 + PP_0869 0.20 -1.2
1,008,876 - PP_0869 0.20 -0.5
1,008,876 - PP_0869 0.20 -0.2
1,009,081 + PP_0869 0.52 -1.1
1,009,111 + PP_0869 0.56 -0.6
1,009,111 + PP_0869 0.56 +0.1
1,009,403 + +0.1
1,009,404 - -0.0
1,009,404 - -0.6
1,009,605 + PP_0870 0.22 -0.1
1,009,831 + PP_0870 0.46 -1.0
1,009,831 + PP_0870 0.46 +0.0
1,009,832 - PP_0870 0.46 -1.2
1,009,832 - PP_0870 0.46 -0.3
1,009,926 + PP_0870 0.56 -2.9
1,009,926 + PP_0870 0.56 +2.1
1,009,927 - PP_0870 0.57 -0.2
1,009,927 - PP_0870 0.57 -1.4
1,009,927 - PP_0870 0.57 -0.5
1,009,927 - PP_0870 0.57 +0.5
1,009,927 - PP_0870 0.57 +0.1
1,009,998 + PP_0870 0.64 -0.3
1,009,999 - PP_0870 0.64 +0.6
1,010,020 + PP_0870 0.66 +0.5
1,010,020 + PP_0870 0.66 -0.4
1,010,021 - PP_0870 0.67 +0.4
1,010,041 - PP_0870 0.69 +0.2
1,010,065 - PP_0870 0.71 -0.3
1,010,167 - PP_0870 0.82 -0.7
1,010,321 - +1.0
1,010,321 - +0.0

Or see this region's nucleotide sequence