Strain Fitness in Pseudomonas putida KT2440 around PP_5674

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,006,201	+		PP_4410	0.77	-0.2
5,006,202	-		PP_4410	0.77	-0.4
5,006,215	+		PP_4410	0.78	-0.5
5,006,226	+		PP_4410	0.78	-0.3
5,006,227	-		PP_4410	0.78	+0.6
5,006,227	-		PP_4410	0.78	+0.1
5,006,228	+		PP_4410	0.78	+0.2
5,006,229	-		PP_4410	0.78	-0.1
5,006,393	-		PP_4410	0.83	-0.0
5,006,623	-				-0.5
5,006,771	+				+0.1
5,007,052	-				+0.0
5,007,141	-				+1.1
5,007,386	+		PP_5674	0.61	+0.2
5,007,386	+		PP_5674	0.61	-0.6
5,007,518	+		PP_5674	0.83	+1.0
5,007,536	+		PP_5674	0.86	+0.2
5,007,536	+		PP_5674	0.86	+1.3
5,007,589	+				-1.2
5,007,635	-				-1.1
5,007,635	-				-0.6
5,007,711	+				+0.2
5,007,712	-				+0.4
5,007,717	+				+0.0
5,007,718	-				-0.7
5,007,718	-				+0.6
5,007,767	+				-0.2
5,007,767	+				+0.6
5,007,768	-				+0.0
5,007,784	-				-0.2
5,007,784	-				-0.5
5,007,839	+				-0.8
5,007,840	-				-0.4
5,007,880	+				+0.3
5,007,881	-				+0.1
5,007,909	+				+0.7
5,007,909	+				+0.5
5,007,913	+				+1.6
5,007,913	+				-0.0
5,007,913	+				-0.5
5,007,914	-				-0.6
5,007,914	-				-0.1
5,007,914	-				-0.1
5,007,914	-				+0.6
5,007,914	-				-0.3
5,007,914	-				-0.2
5,007,914	-				-0.2
5,007,923	-				-1.0
5,007,948	-				-0.4
5,007,970	+				-0.1
5,007,970	+				+0.0
5,007,971	-				-0.3
5,007,971	-				+0.1
5,008,004	+				+0.4
5,008,004	+				+0.0
5,008,004	+				-1.0
5,008,004	+				+0.0
5,008,004	+				+0.8
5,008,004	+				+0.3
5,008,005	-				-0.1
5,008,005	-				-0.3
5,008,090	+				+1.5
5,008,199	+				-0.2
5,008,200	-				-0.5
5,008,200	-				-0.3
5,008,281	+				-1.2
5,008,442	+				+0.5
5,008,496	+				-0.1
5,008,513	-				+0.3
5,008,580	+		PP_4411	0.11	-0.2
5,008,589	+		PP_4411	0.13	+0.0
5,008,589	+		PP_4411	0.13	+0.4
5,008,590	-		PP_4411	0.13	-0.4
5,008,590	-		PP_4411	0.13	+0.3
5,008,590	-		PP_4411	0.13	-0.7
5,008,590	-		PP_4411	0.13	+0.3