Strain Fitness in Pseudomonas putida KT2440 around PP_5556

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,446,508	-		PP_3065	0.86	-0.5
3,446,533	-		PP_3065	0.89	-1.0
3,446,533	-		PP_3065	0.89	+0.1
3,446,536	+		PP_3065	0.89	-0.9
3,446,554	+				-1.2
3,446,662	+				-2.0
3,446,692	+				+0.7
3,446,693	-				+0.4
3,446,750	+		PP_3066	0.11	+2.2
3,446,750	+		PP_3066	0.11	-0.5
3,446,751	-		PP_3066	0.12	+2.0
3,446,751	-		PP_3066	0.12	+0.6
3,446,770	+		PP_3066	0.15	+2.1
3,446,770	+		PP_3066	0.15	+0.6
3,446,770	+		PP_3066	0.15	-0.8
3,446,770	+		PP_3066	0.15	-0.3
3,446,770	+		PP_3066	0.15	-1.3
3,446,773	+		PP_3066	0.16	-0.3
3,446,773	+		PP_3066	0.16	+0.1
3,446,806	+		PP_3066	0.22	-1.3
3,446,806	+		PP_3066	0.22	-0.9
3,446,855	+		PP_3066	0.30	+0.4
3,446,882	+		PP_3066	0.35	-1.2
3,446,882	+		PP_3066	0.35	+1.0
3,446,882	+		PP_3066	0.35	+0.2
3,446,882	+		PP_3066	0.35	-0.2
3,446,882	+		PP_3066	0.35	+1.0
3,446,883	-		PP_3066	0.36	-0.4
3,446,883	-		PP_3066	0.36	-0.4
3,446,883	-		PP_3066	0.36	+0.2
3,446,883	-		PP_3066	0.36	+0.1
3,446,894	+		PP_3066	0.38	-0.7
3,446,960	+		PP_3066	0.49	+0.1
3,446,978	-		PP_3066	0.53	-2.3
3,447,002	+		PP_3066	0.57	-0.1
3,447,003	-		PP_3066	0.57	+0.3
3,447,050	-		PP_3066	0.66	+1.3
3,447,166	+		PP_3066	0.87	-0.5
3,447,167	-		PP_3066	0.87	-0.3
3,447,209	+				+0.5
3,447,209	+				-1.2
3,447,331	+		PP_5556	0.17	-0.9
3,447,332	-		PP_5556	0.17	-1.1
3,447,332	-		PP_5556	0.17	-0.3
3,447,333	+		PP_5556	0.17	-0.1
3,447,564	+		PP_5556	0.59	-0.1
3,447,564	+		PP_5556	0.59	-1.1
3,447,565	-		PP_5556	0.59	-0.2
3,447,565	-		PP_5556	0.59	-1.1
3,447,896	+				-1.2
3,447,897	-				-0.7
3,447,960	-		PP_5557	0.33	+0.2
3,448,078	-		PP_5557	0.79	-0.1
3,448,127	+				+0.3
3,448,127	+				+0.2
3,448,184	+				+0.2
3,448,534	+				-1.6
3,448,549	+				-0.1
3,448,572	+				-1.2
3,448,598	+				+0.8
3,448,598	+				+0.2
3,448,599	-				+0.2
3,448,599	-				+0.4
3,448,599	-				+0.8
3,448,769	+				-0.5
3,448,769	+				+0.4
3,448,770	-				+0.3
3,448,772	-				+0.3
3,448,794	+				-0.1