Strain Fitness in Pseudomonas putida KT2440 around PP_5181

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,907,241	+		PP_5180	0.34	+0.5
5,907,241	+		PP_5180	0.34	+1.0
5,907,241	+		PP_5180	0.34	+0.6
5,907,242	-		PP_5180	0.34	+1.0
5,907,242	-		PP_5180	0.34	+0.4
5,907,299	+		PP_5180	0.39	+1.5
5,907,300	-		PP_5180	0.39	-0.3
5,907,300	-		PP_5180	0.39	-0.8
5,907,300	-		PP_5180	0.39	+0.7
5,907,317	+		PP_5180	0.41	-0.6
5,907,317	+		PP_5180	0.41	-0.3
5,907,317	+		PP_5180	0.41	+0.4
5,907,317	+		PP_5180	0.41	-0.3
5,907,326	+		PP_5180	0.41	-1.0
5,907,326	+		PP_5180	0.41	+2.1
5,907,326	+		PP_5180	0.41	+1.4
5,907,326	+		PP_5180	0.41	+1.4
5,907,327	-		PP_5180	0.42	+0.1
5,907,365	+		PP_5180	0.45	+0.7
5,907,365	+		PP_5180	0.45	+0.2
5,907,366	-		PP_5180	0.45	+0.3
5,907,404	+		PP_5180	0.49	+1.0
5,907,404	+		PP_5180	0.49	+0.7
5,907,404	+		PP_5180	0.49	-0.6
5,907,405	-		PP_5180	0.49	-0.4
5,907,405	-		PP_5180	0.49	-0.5
5,907,405	-		PP_5180	0.49	+0.7
5,907,405	-		PP_5180	0.49	-0.4
5,907,405	-		PP_5180	0.49	-0.4
5,907,554	+		PP_5180	0.62	-0.3
5,907,554	+		PP_5180	0.62	+0.7
5,907,555	-		PP_5180	0.62	+0.6
5,907,582	-		PP_5180	0.65	-2.2
5,907,582	-		PP_5180	0.65	+0.3
5,907,654	-		PP_5180	0.71	-0.6
5,907,860	+				+1.1
5,907,861	-				+0.7
5,907,874	-				+0.5
5,907,874	-				+0.6
5,907,875	+				+1.0
5,907,875	+				-0.9
5,907,876	-				+0.2
5,907,876	-				+0.3
5,907,876	-				+1.0
5,907,876	-				-0.8
5,907,876	-				-0.3
5,907,953	-				-0.7
5,907,961	-				+0.7
5,908,037	-				-0.2
5,908,037	-				-0.5
5,908,069	+				-1.5
5,908,070	-				+0.4
5,908,125	-				+0.3
5,908,199	+				+2.5
5,908,200	-				+0.1
5,908,200	-				-1.3
5,908,200	-				+0.6
5,908,229	+				-0.2
5,908,229	+				-0.3
5,908,358	+		PP_5181	0.21	+1.8
5,908,358	+		PP_5181	0.21	-0.5
5,908,371	+		PP_5181	0.23	+1.9
5,908,372	-		PP_5181	0.23	+0.3
5,908,407	-		PP_5181	0.26	-0.2
5,908,407	-		PP_5181	0.26	-1.7
5,908,407	-		PP_5181	0.26	+0.2
5,908,413	+		PP_5181	0.26	+1.0
5,908,439	+		PP_5181	0.29	+1.0
5,908,439	+		PP_5181	0.29	+1.9
5,908,439	+		PP_5181	0.29	+1.2
5,908,440	-		PP_5181	0.29	-0.3
5,908,440	-		PP_5181	0.29	+0.3
5,908,440	-		PP_5181	0.29	+1.2
5,908,517	-		PP_5181	0.36	-0.9
5,908,550	+		PP_5181	0.39	-0.4
5,908,551	-		PP_5181	0.39	+0.7
5,908,568	+		PP_5181	0.41	+0.1
5,908,569	-		PP_5181	0.41	+0.8
5,908,569	-		PP_5181	0.41	-0.7
5,908,655	+		PP_5181	0.48	+1.0
5,908,656	-		PP_5181	0.49	+0.1
5,908,805	+		PP_5181	0.62	+1.2
5,908,805	+		PP_5181	0.62	+0.1
5,908,830	+		PP_5181	0.64	+0.7
5,908,830	+		PP_5181	0.64	+2.1
5,908,830	+		PP_5181	0.64	+1.2
5,908,830	+		PP_5181	0.64	-0.0
5,908,830	+		PP_5181	0.64	+1.7
5,908,831	-		PP_5181	0.64	+1.3
5,908,831	-		PP_5181	0.64	+0.1
5,908,831	-		PP_5181	0.64	+0.9
5,908,831	-		PP_5181	0.64	+0.5
5,908,831	-		PP_5181	0.64	+1.0
5,908,832	+		PP_5181	0.65	+0.4
5,908,832	+		PP_5181	0.65	+0.3
5,908,832	+		PP_5181	0.65	+1.1
5,908,832	+		PP_5181	0.65	+0.2
5,908,832	+		PP_5181	0.65	-0.2
5,908,832	+		PP_5181	0.65	+1.2
5,908,832	+		PP_5181	0.65	+0.6
5,908,832	+		PP_5181	0.65	-0.7
5,908,832	+		PP_5181	0.65	+0.2
5,908,832	+		PP_5181	0.65	+0.7
5,908,833	-		PP_5181	0.65	+1.0
5,908,833	-		PP_5181	0.65	+0.9
5,908,833	-		PP_5181	0.65	+0.4
5,908,833	-		PP_5181	0.65	-0.3
5,908,833	-		PP_5181	0.65	+0.7
5,908,833	-		PP_5181	0.65	+0.3
5,908,940	+		PP_5181	0.74	-0.9
5,908,941	-		PP_5181	0.74	+0.4
5,909,057	+		PP_5181	0.85	+0.3
5,909,057	+		PP_5181	0.85	+0.4
5,909,057	+		PP_5181	0.85	+0.3
5,909,058	-		PP_5181	0.85	+0.3
5,909,058	-		PP_5181	0.85	+1.5
5,909,114	+				+0.5
5,909,115	-				+0.2
5,909,115	-				-0.1
5,909,127	+				+0.5
5,909,127	+				-0.3
5,909,127	+				+0.4
5,909,127	+				+0.6
5,909,127	+				-0.4
5,909,128	-				+0.8
5,909,128	-				-0.2
5,909,128	-				+0.8
5,909,128	-				-0.7
5,909,129	+				+0.7
5,909,130	-				-1.2
5,909,130	-				-0.1
5,909,130	-				+0.3
5,909,215	-				+1.1
5,909,224	+				+0.5
5,909,224	+				+0.8
5,909,224	+				+1.4
5,909,224	+				+0.4
5,909,245	+				+0.1
5,909,246	-				-1.4
5,909,246	-				-0.6
5,909,305	+				-0.4
5,909,330	+				+0.4
5,909,352	+				+1.3
5,909,353	-				-0.1
5,909,353	-				-2.5
5,909,353	-				+0.5
5,909,353	-				-0.5
5,909,353	-				-0.3
5,909,360	+				+0.1
5,909,361	-				-0.7
5,909,361	-				-0.5
5,909,379	+				+0.3
5,909,467	+				+0.4
5,909,867	+		PP_5182	0.35	+1.0
5,909,867	+		PP_5182	0.35	+0.7
5,909,867	+		PP_5182	0.35	-0.3
5,909,868	-		PP_5182	0.35	-1.5
5,909,918	+		PP_5182	0.39	+0.1
5,909,919	-		PP_5182	0.39	-0.2
5,909,919	-		PP_5182	0.39	-0.7
5,909,921	+		PP_5182	0.39	-0.1
5,909,921	+		PP_5182	0.39	-0.8
5,909,994	-		PP_5182	0.44	-0.3
5,909,994	-		PP_5182	0.44	+0.0
5,910,189	-		PP_5182	0.59	-0.5