Strain Fitness in Pseudomonas putida KT2440 around PP_5092

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,815,281	-		PP_5090	0.66	-0.7
5,815,281	-		PP_5090	0.66	-0.1
5,815,329	+		PP_5090	0.73	-1.7
5,815,557	+				+0.1
5,815,557	+				-0.9
5,815,557	+				+0.6
5,815,557	+				-0.2
5,815,558	-				-0.3
5,815,558	-				+0.5
5,815,558	-				-1.1
5,815,559	+				-0.1
5,815,560	-				-0.1
5,815,560	-				+0.4
5,815,588	+				+0.8
5,815,588	+				+0.5
5,815,588	+				+0.1
5,815,588	+				-1.6
5,815,588	+				+0.7
5,815,589	-				-0.1
5,815,589	-				+0.9
5,815,662	+		PP_5091	0.13	-0.6
5,815,662	+		PP_5091	0.13	+0.9
5,815,662	+				-0.9
5,815,663	-		PP_5091	0.13	-0.8
5,815,701	+		PP_5091	0.22	+0.5
5,815,701	+		PP_5091	0.22	-1.2
5,815,702	-		PP_5091	0.23	-0.9
5,815,732	-		PP_5091	0.30	-0.8
5,815,788	+		PP_5091	0.43	+0.8
5,815,789	-		PP_5091	0.43	-1.1
5,815,789	-		PP_5091	0.43	+0.5
5,815,789	-		PP_5091	0.43	-0.7
5,815,923	+		PP_5091	0.75	+0.3
5,815,926	+		PP_5091	0.76	-0.0
5,815,926	+		PP_5091	0.76	-1.2
5,815,927	-				-0.3
5,815,927	-		PP_5091	0.76	-1.1
5,815,968	+		PP_5091	0.86	-4.0
5,816,016	+				-1.6
5,816,016	+				+0.3
5,816,017	-				+0.7
5,816,030	+				-0.2
5,816,096	-				+0.8
5,816,126	+				+0.1
5,816,126	+				+0.0
5,816,127	-				+0.8
5,816,127	-				+0.6
5,816,147	+				-0.5
5,816,147	+				+1.2
5,816,147	+				-0.7
5,816,167	+				+1.3
5,816,167	+				-0.6
5,816,167	+				-0.4
5,816,167	+				-0.3
5,816,167	+				+0.1
5,816,168	-				+0.6
5,816,168	-				+0.5
5,816,168	-				+0.6
5,816,171	+				-2.0
5,816,171	+				-1.2
5,816,171	+				+0.2
5,816,171	+				-1.3
5,816,171	+				-0.3
5,816,171	+				-0.3
5,816,171	+				+0.6
5,816,172	-				-1.4
5,816,172	-				+0.4
5,816,172	-				+1.4
5,816,177	+				-0.3
5,816,177	+				-0.3
5,816,177	+				-0.4
5,816,177	+				-0.2
5,816,178	-				+1.8
5,816,190	+				-1.1
5,816,190	+				-0.1
5,816,190	+				+0.7
5,816,190	+				+0.6
5,816,191	-				-0.5
5,816,191	-				+1.0
5,816,229	-				+0.9
5,816,231	+				-0.3
5,816,231	+				-0.3
5,816,231	+				+1.4
5,816,294	-		PP_5092	0.17	+0.6
5,816,295	+		PP_5092	0.17	-0.7
5,816,295	+		PP_5092	0.17	-0.2
5,816,295	+		PP_5092	0.17	+0.5
5,816,296	-		PP_5092	0.17	-0.3
5,816,296	-		PP_5092	0.17	+0.3
5,816,296	-		PP_5092	0.17	+0.8
5,816,435	+		PP_5092	0.39	+0.8
5,816,448	+		PP_5092	0.41	+3.3
5,816,455	+		PP_5092	0.42	-2.0
5,816,455	+		PP_5092	0.42	+1.2
5,816,456	-		PP_5092	0.42	+1.0
5,816,456	-		PP_5092	0.42	-0.0
5,816,456	-		PP_5092	0.42	+0.8
5,816,456	-		PP_5092	0.42	+0.4
5,816,456	-		PP_5092	0.42	+0.8
5,816,512	+		PP_5092	0.51	+1.7
5,816,513	-		PP_5092	0.52	+0.6
5,816,657	+		PP_5092	0.75	-1.7
5,816,657	+		PP_5092	0.75	+0.1
5,816,657	+		PP_5092	0.75	+0.3
5,816,665	+		PP_5092	0.76	-0.0
5,816,665	+		PP_5092	0.76	+1.9
5,816,666	-		PP_5092	0.76	-0.1
5,816,666	-		PP_5092	0.76	+0.6
5,816,666	-		PP_5092	0.76	+0.5
5,816,666	-		PP_5092	0.76	+0.5
5,816,741	-		PP_5092	0.88	+0.1
5,816,755	+				+0.3
5,816,755	+				+0.6
5,816,755	+				-0.7
5,816,755	+				+0.9
5,816,755	+				-0.1
5,816,756	-				+0.1
5,816,870	+				+0.3
5,816,899	+				-0.5
5,816,899	+				+0.3
5,816,899	+				+0.1
5,816,899	+				-0.1
5,816,899	+				-1.0
5,816,899	+				+0.4
5,816,900	-				+1.1
5,816,900	-				-0.2
5,816,900	-				+1.2
5,816,900	-				-2.0
5,816,900	-				-0.4
5,816,900	-				-0.6
5,816,900	-				+0.2
5,816,944	+				+0.1
5,816,944	+				-1.3
5,816,944	+				-1.1
5,816,944	+				+0.9
5,816,944	+				-0.7
5,816,944	+				+0.5
5,816,944	+				-0.9
5,816,944	+				-1.8
5,816,945	-				-0.3
5,816,945	-				+0.7
5,816,945	-				+2.4
5,817,659	+		PP_5093	0.71	-1.2