Strain Fitness in Pseudomonas putida KT2440 around PP_5047

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,753,546	+				-0.7
5,753,662	-				-0.7
5,753,762	-				-0.6
5,753,804	+				+0.1
5,753,804	+				+0.2
5,753,804	+				+0.3
5,753,892	+				-0.4
5,753,892	+				+1.0
5,753,892	+				+0.2
5,753,893	-				-0.1
5,754,050	+		PP_5047	0.23	-0.2
5,754,051	-		PP_5047	0.23	+0.2
5,754,092	-		PP_5047	0.26	-0.3
5,754,274	+		PP_5047	0.43	-0.2
5,754,312	+		PP_5047	0.47	+1.3
5,754,313	-		PP_5047	0.47	+0.0
5,754,313	-		PP_5047	0.47	+2.5
5,754,407	+		PP_5047	0.55	+0.6
5,754,729	+		PP_5047	0.85	+0.9
5,754,729	+		PP_5047	0.85	-0.5
5,754,729	+		PP_5047	0.85	+1.1
5,754,729	+		PP_5047	0.85	+0.5
5,754,730	-		PP_5047	0.85	-1.0
5,754,779	+		PP_5047	0.90	+0.5
5,754,855	+				-0.2
5,754,855	+				-0.3
5,754,855	+				-0.2
5,754,856	-				+0.0
5,754,856	-				-0.0
5,754,856	-				-1.0
5,754,907	-				-0.0
5,755,169	+		PP_5048	0.20	-0.4
5,755,170	-		PP_5048	0.20	+0.2
5,755,170	-		PP_5048	0.20	+1.3
5,755,170	-		PP_5048	0.20	-0.2
5,755,170	-		PP_5048	0.20	+0.8
5,755,190	+		PP_5048	0.21	+0.7
5,755,674	-		PP_5048	0.55	+0.3
5,755,805	-		PP_5048	0.64	-1.0
5,755,810	+		PP_5048	0.64	-0.7
5,755,811	-		PP_5048	0.64	-0.2
5,755,811	-		PP_5048	0.64	-1.3
5,755,811	-		PP_5048	0.64	-0.5