Strain Fitness in Pseudomonas putida KT2440 around PP_4988

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,681,026	+		PP_4986	0.58	+0.5
5,681,027	-		PP_4986	0.59	-0.3
5,681,027	-		PP_4986	0.59	-0.2
5,681,048	-		PP_4986	0.62	+0.7
5,681,048	-		PP_4986	0.62	+3.1
5,681,125	+		PP_4986	0.74	+0.2
5,681,125	+		PP_4986	0.74	-0.5
5,681,125	+		PP_4986	0.74	-0.4
5,681,125	+		PP_4986	0.74	+0.4
5,681,149	+		PP_4986	0.78	+0.2
5,681,223	-				-0.6
5,681,275	+				+0.6
5,681,276	-				-0.2
5,681,278	+				+2.5
5,681,278	+				+0.5
5,681,278	+				-0.1
5,681,278	+				-1.2
5,681,279	-				+0.0
5,681,279	-				+0.3
5,681,488	-				+0.7
5,681,617	-		PP_4987	0.28	+0.2
5,681,846	-		PP_4987	0.76	+0.3
5,681,846	-		PP_4987	0.76	-0.1
5,682,007	+				-0.4
5,682,007	+				+0.6
5,682,219	+				+0.9
5,682,219	+				+1.7
5,682,219	+				+0.3
5,682,220	-				-0.1
5,682,220	-				-0.2
5,682,220	-				-0.2
5,682,220	-				+0.5
5,682,285	+				+1.4
5,682,360	-				-0.3
5,682,466	-		PP_4988	0.10	-0.2
5,682,646	+		PP_4988	0.14	+0.9
5,682,658	+		PP_4988	0.14	+1.5
5,682,659	-		PP_4988	0.14	+0.9
5,682,673	+		PP_4988	0.15	+1.2
5,682,674	-		PP_4988	0.15	+2.9
5,682,674	-		PP_4988	0.15	-0.6
5,682,674	-		PP_4988	0.15	+0.4
5,682,679	+		PP_4988	0.15	+2.7
5,682,680	-		PP_4988	0.15	+1.0
5,682,700	+		PP_4988	0.15	+1.0
5,682,766	+		PP_4988	0.16	+1.0
5,682,766	+		PP_4988	0.16	+0.6
5,683,211	+		PP_4988	0.25	+2.1
5,683,232	+		PP_4988	0.26	+1.7
5,683,232	+		PP_4988	0.26	+2.4
5,683,233	-		PP_4988	0.26	+1.3
5,683,430	-		PP_4988	0.30	+2.7
5,683,430	-		PP_4988	0.30	-0.7
5,683,558	+		PP_4988	0.33	-0.8
5,683,559	-				+0.0
5,683,809	+		PP_4988	0.38	+1.3
5,683,888	+		PP_4988	0.39	-0.1
5,683,889	-		PP_4988	0.39	-1.1
5,683,946	+		PP_4988	0.40	+0.3
5,683,947	-		PP_4988	0.40	+0.0
5,684,010	-				+2.8
5,684,029	+		PP_4988	0.42	-0.8
5,684,548	+		PP_4988	0.53	+0.7
5,684,548	+		PP_4988	0.53	+1.4
5,684,549	-		PP_4988	0.53	+0.7
5,684,965	+		PP_4988	0.61	+1.2
5,685,109	+		PP_4988	0.64	+1.1
5,685,110	-				+2.7
5,685,328	-		PP_4988	0.68	+0.0
5,685,449	+				+0.1
5,685,449	+		PP_4988	0.71	+1.7
5,685,449	+		PP_4988	0.71	-1.8
5,685,450	-		PP_4988	0.71	+1.0
5,685,450	-		PP_4988	0.71	+1.3
5,685,811	+		PP_4988	0.78	+1.2
5,685,811	+		PP_4988	0.78	+1.6
5,685,812	-		PP_4988	0.78	+0.2
5,686,088	-		PP_4988	0.84	-0.1
5,686,878	+				+0.8
5,686,879	-				-1.3
5,686,900	-				+1.8
5,687,112	+		PP_4989	0.10	-0.8
5,687,114	+				+0.4
5,687,256	-		PP_4989	0.17	+0.1
5,687,594	-		PP_4989	0.33	-1.0
5,687,791	+		PP_4989	0.43	+0.3
5,687,792	-		PP_4989	0.43	-0.3