Strain Fitness in Pseudomonas putida KT2440 around PP_4470

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,075,923	+				-1.0
5,075,924	-				-0.9
5,075,953	+				-0.2
5,075,954	-				-0.1
5,075,957	-				+0.3
5,075,957	-				+0.0
5,076,018	+		PP_4469	0.13	+0.2
5,076,200	+		PP_4469	0.43	-0.1
5,076,272	+		PP_4469	0.55	-0.4
5,076,272	+		PP_4469	0.55	-0.2
5,076,273	-		PP_4469	0.55	+0.8
5,076,273	-		PP_4469	0.55	+0.6
5,076,273	-		PP_4469	0.55	+0.2
5,076,273	-		PP_4469	0.55	-0.7
5,076,277	+		PP_4469	0.56	-0.1
5,076,277	+		PP_4469	0.56	-0.2
5,076,278	-		PP_4469	0.56	+0.3
5,076,278	-		PP_4469	0.56	-0.9
5,076,327	+		PP_4469	0.64	-0.3
5,076,488	-				+1.8
5,076,488	-				+0.7
5,076,534	+				+0.6
5,076,541	+				+0.4
5,076,541	+				+0.4
5,076,542	-				+0.2
5,076,542	-				+1.0
5,076,542	-				+0.5
5,076,548	+				-1.2
5,076,548	+				+1.3
5,076,548	+				-0.5
5,076,549	-				-0.5
5,076,549	-				+0.3
5,076,551	-				+0.2
5,076,636	+		PP_5693	0.36	-0.7
5,076,705	-		PP_5693	0.61	-0.9
5,076,716	+		PP_5693	0.65	-1.4
5,076,717	-		PP_5693	0.66	+0.2
5,076,727	+		PP_5693	0.69	-0.4
5,076,728	-		PP_5693	0.70	-0.8
5,076,728	-		PP_5693	0.70	+0.1
5,076,728	-		PP_5693	0.70	+0.2
5,076,728	-		PP_5693	0.70	+0.7
5,076,815	+				+0.5
5,076,816	-				+0.9
5,076,877	-				+0.4
5,076,877	-				+1.3
5,076,899	+				+0.9
5,076,903	+				-0.3
5,076,904	-				+0.3
5,076,974	-		PP_4470	0.29	+0.8
5,077,035	-		PP_4470	0.48	+0.5
5,077,035	-		PP_4470	0.48	+0.6
5,077,235	+				-0.4
5,077,235	+				+0.6
5,077,235	+				+0.7
5,077,236	-				+0.3
5,077,236	-				+0.3
5,077,236	-				-0.4
5,077,314	+				+0.7
5,077,314	+				-0.7
5,077,314	+				+0.8
5,077,315	-				-1.1
5,077,463	+		PP_4471	0.10	+0.6
5,077,518	+		PP_4471	0.14	-0.5
5,077,518	+		PP_4471	0.14	-1.3
5,077,518	+				-0.7
5,077,519	-		PP_4471	0.14	-2.7
5,077,519	-		PP_4471	0.14	-0.9
5,077,610	-		PP_4471	0.21	+0.1
5,077,984	-		PP_4471	0.47	-0.1
5,077,984	-		PP_4471	0.47	+0.8
5,077,984	-		PP_4471	0.47	+0.4
5,078,010	+		PP_4471	0.48	-0.4
5,078,011	-		PP_4471	0.48	-0.4
5,078,019	-		PP_4471	0.49	-0.1
5,078,108	+		PP_4471	0.55	-1.8