Strain Fitness in Pseudomonas putida KT2440 around PP_4180

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
4,722,648	-		PP_4179	0.52	-0.2
4,722,648	-		PP_4179	0.52	+0.5
4,722,648	-		PP_4179	0.52	+0.7
4,722,680	+		PP_4179	0.54	-0.1
4,722,710	+		PP_4179	0.55	+0.5
4,722,710	+		PP_4179	0.55	+0.1
4,722,710	+		PP_4179	0.55	-1.0
4,722,710	+		PP_4179	0.55	-0.5
4,722,710	+		PP_4179	0.55	+0.2
4,722,710	+		PP_4179	0.55	-0.1
4,722,711	-		PP_4179	0.55	-0.2
4,722,711	-		PP_4179	0.55	+1.8
4,722,725	+		PP_4179	0.56	+0.8
4,722,725	+		PP_4179	0.56	+0.0
4,722,725	+		PP_4179	0.56	+0.7
4,722,726	-		PP_4179	0.56	-1.9
4,722,726	-		PP_4179	0.56	-0.2
4,722,797	+				-1.1
4,722,797	+		PP_4179	0.60	-0.2
4,722,798	-		PP_4179	0.60	+1.6
4,722,798	-		PP_4179	0.60	-0.1
4,722,798	-		PP_4179	0.60	+0.4
4,722,810	-		PP_4179	0.60	+1.0
4,723,137	-		PP_4179	0.78	-1.3
4,723,137	-		PP_4179	0.78	+0.5
4,723,173	-		PP_4179	0.79	+0.5
4,723,793	+		PP_4180	0.33	-0.2
4,723,797	+				+2.8
4,723,798	-		PP_4180	0.34	+1.2
4,723,824	-		PP_4180	0.40	+0.8
4,723,872	-		PP_4180	0.49	+0.0
4,723,872	-		PP_4180	0.49	+1.5
4,723,884	-		PP_4180	0.52	+0.9
4,724,269	+		PP_4181	0.33	+0.1
4,724,269	+		PP_4181	0.33	-0.5
4,724,269	+		PP_4181	0.33	+0.3
4,724,270	-		PP_4181	0.33	+0.3
4,724,287	+		PP_4181	0.37	-0.5
4,724,287	+		PP_4181	0.37	+1.3
4,724,287	+		PP_4181	0.37	-2.0
4,724,287	+		PP_4181	0.37	-0.3
4,724,288	-		PP_4181	0.37	-0.2
4,724,288	-		PP_4181	0.37	+1.6
4,724,288	-				+1.9
4,724,288	-		PP_4181	0.37	-1.7
4,724,288	-		PP_4181	0.37	+1.7
4,724,288	-		PP_4181	0.37	+0.2
4,724,320	+		PP_4181	0.44	-0.7
4,724,320	+		PP_4181	0.44	-0.8
4,724,321	-		PP_4181	0.44	+0.9
4,724,321	-		PP_4181	0.44	-0.1
4,724,622	-				-0.1
4,724,644	-				-0.2
4,724,656	+				-2.3
4,724,656	+				-0.1
4,724,657	-				+0.8
4,724,657	-				+0.8
4,724,658	+				+0.1
4,724,658	+				-1.0
4,724,659	-				+0.8
4,724,659	-				+0.1
4,724,659	-				+0.5
4,724,660	+				-0.4
4,724,660	+				+0.1
4,724,661	-				+0.3
4,724,661	-				+0.6
4,724,691	+				-0.7
4,724,749	-				+1.2
4,724,749	-				+1.7
4,724,749	-				+1.2
4,724,749	-				+0.9
4,724,805	+		PP_5661	0.23	+0.4
4,724,806	-		PP_5661	0.23	+1.0
4,724,883	+		PP_5661	0.51	+1.4
4,724,985	+		PP_5661	0.89	+0.9
4,724,985	+		PP_5661	0.89	+0.5
4,724,986	-		PP_5661	0.89	+0.3
4,724,988	+				+0.3
4,724,988	+				-1.4
4,724,988	+				-1.1
4,724,988	+				+1.0
4,724,989	-				+0.3
4,725,013	+				+0.8
4,725,014	-				+1.0
4,725,014	-				+1.0
4,725,014	-				-1.0
4,725,021	+				+0.0