Strain Fitness in Pseudomonas putida KT2440 around PP_3935

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
4,439,232	-		PP_3934	0.15	+0.2
4,439,512	-		PP_3934	0.45	-0.2
4,439,543	+		PP_3934	0.48	-2.0
4,439,543	+		PP_3934	0.48	+0.6
4,439,628	+		PP_3934	0.57	-1.8
4,439,628	+		PP_3934	0.57	-0.2
4,439,629	-		PP_3934	0.57	+0.3
4,439,643	+		PP_3934	0.59	-0.4
4,439,643	+		PP_3934	0.59	-0.1
4,439,643	+		PP_3934	0.59	-0.2
4,439,644	-		PP_3934	0.59	+0.4
4,439,956	+				-1.1
4,439,956	+				-0.8
4,439,957	-				-0.0
4,439,957	-				-0.2
4,439,957	-				+0.7
4,439,957	-				+1.2
4,439,957	-				+0.1
4,439,957	-				-0.3
4,439,957	-				+0.7
4,439,957	-				+0.3
4,439,958	+				+0.5
4,440,289	-		PP_3935	0.74	+1.2
4,440,289	-		PP_3935	0.74	+1.3
4,440,289	-		PP_3935	0.74	+0.6
4,440,289	-		PP_3935	0.74	+0.3
4,440,372	-				+0.0
4,440,438	+				-0.9
4,440,439	-				-0.4
4,440,464	-				+0.6
4,440,464	-				+0.5
4,440,464	-				+0.4
4,440,606	+				-1.2
4,440,606	+				+0.1
4,440,606	+				+0.7
4,440,606	+				-0.8
4,440,607	-				-0.3
4,440,692	+				-0.3
4,440,697	+				-1.4
4,440,697	+				+0.5
4,440,698	-				+0.0
4,440,741	+				+0.1
4,440,741	+				-0.0
4,440,742	-				+0.1
4,440,748	-				-0.5
4,440,763	+				-0.4
4,440,785	+				-1.2
4,440,786	-				+0.0
4,440,794	+				+0.1
4,440,794	+				+1.7
4,440,830	+				+1.6
4,440,830	+				+0.8
4,440,830	+				-0.0
4,440,864	+				+0.7
4,440,864	+				-0.7
4,440,864	+				-2.6
4,440,864	+				+0.5
4,440,865	-				-0.1
4,440,928	+		PP_3938	0.25	+0.0
4,440,955	-		PP_3938	0.40	-0.2
4,441,175	+				-0.4
4,441,175	+				+0.3
4,441,176	-				+0.1
4,441,176	-				-0.5
4,441,193	+				-0.0
4,441,193	+				+3.0
4,441,193	+				+0.1
4,441,193	+				+1.9
4,441,193	+				-1.4
4,441,193	+				-0.2
4,441,193	+				+0.0
4,441,193	+				+0.3
4,441,193	+				+1.0
4,441,194	-				-0.0
4,441,194	-				-0.4
4,441,231	+				+0.4
4,441,231	+				-1.8
4,441,232	-				-0.9
4,441,232	-				+0.1
4,441,232	-				-1.0
4,441,258	-				-0.9
4,441,283	+				+0.6
4,441,283	+				-0.4
4,441,283	+				+0.5
4,441,283	+				-0.2
4,441,283	+				+1.3
4,441,283	+				-0.2
4,441,283	+				-0.2
4,441,283	+				+0.3
4,441,283	+				+1.3
4,441,283	+				+0.4
4,441,283	+				-0.5
4,441,284	-				-0.3
4,441,284	-				-0.6
4,441,284	-				-0.1
4,441,284	-				+0.7
4,441,284	-				+0.4
4,441,284	-				+1.0
4,441,284	-				-0.5
4,441,284	-				+0.3
4,441,284	-				-0.7
4,441,284	-				+0.3
4,441,285	+				+0.2
4,441,286	-				-0.9
4,441,286	-				-0.1