Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3899 and PP_3900 are separated by 8 nucleotides PP_3900 and PP_3901 are separated by 149 nucleotides PP_3901 and PP_3902 are separated by 118 nucleotides PP_3902 and PP_3903 overlap by 11 nucleotides PP_3903 and PP_3904 are separated by 205 nucleotides PP_3904 and PP_3905 are separated by 8 nucleotides
PP_3899: PP_3899 - conserved protein of unknown function, hicB family, at 4,415,059 to 4,415,391
_3899
PP_3900: PP_3900 - hypothetical protein, at 4,415,400 to 4,415,648
_3900
PP_3901: PP_3901 - conserved protein of unknown function, at 4,415,798 to 4,416,058
_3901
PP_3902: PP_3902 - conserved protein of unknown function, at 4,416,177 to 4,416,485
_3902
PP_3903: PP_3903 - conserved protein of unknown function, at 4,416,475 to 4,416,639
_3903
PP_3904: PP_3904 - conserved protein of unknown function, at 4,416,845 to 4,417,099
_3904
PP_3905: PP_3905 - Transcriptional regulator, LuxR family, at 4,417,108 to 4,417,659
_3905
Position (kb) 4416
4417 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4415.430 kb on + strand, within PP_3900 at 4415.431 kb on - strand, within PP_3900 at 4415.431 kb on - strand, within PP_3900 at 4415.431 kb on - strand, within PP_3900 at 4415.433 kb on + strand, within PP_3900 at 4415.433 kb on + strand, within PP_3900 at 4415.434 kb on - strand, within PP_3900 at 4415.445 kb on - strand, within PP_3900 at 4415.450 kb on - strand, within PP_3900 at 4415.642 kb on + strand at 4415.643 kb on - strand at 4415.643 kb on - strand at 4415.736 kb on + strand at 4415.736 kb on + strand at 4415.737 kb on - strand at 4415.746 kb on + strand at 4415.746 kb on + strand at 4415.747 kb on - strand at 4415.775 kb on - strand at 4415.792 kb on - strand at 4415.792 kb on - strand at 4415.803 kb on + strand at 4415.924 kb on + strand, within PP_3901 at 4415.924 kb on + strand, within PP_3901 at 4415.924 kb on + strand, within PP_3901 at 4415.925 kb on - strand, within PP_3901 at 4415.925 kb on - strand, within PP_3901 at 4415.994 kb on + strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4416.049 kb on - strand at 4416.107 kb on + strand at 4416.126 kb on + strand at 4416.433 kb on + strand, within PP_3902 at 4416.433 kb on + strand, within PP_3902 at 4416.433 kb on + strand, within PP_3902 at 4416.434 kb on - strand, within PP_3902 at 4416.434 kb on - strand, within PP_3902 at 4416.518 kb on + strand, within PP_3903 at 4416.518 kb on + strand, within PP_3903 at 4416.519 kb on - strand, within PP_3903 at 4416.551 kb on + strand, within PP_3903 at 4416.637 kb on + strand at 4416.650 kb on + strand at 4416.706 kb on - strand at 4416.717 kb on + strand at 4416.718 kb on - strand at 4416.745 kb on + strand at 4416.776 kb on + strand at 4416.777 kb on - strand at 4416.777 kb on - strand at 4416.777 kb on - strand at 4416.847 kb on - strand at 4416.878 kb on - strand, within PP_3904 at 4416.891 kb on - strand, within PP_3904 at 4417.001 kb on - strand, within PP_3904 at 4417.078 kb on + strand at 4417.094 kb on + strand at 4417.095 kb on - strand at 4417.113 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.135 kb on - strand at 4417.358 kb on + strand, within PP_3905
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.001 mg/ml remove 4,415,430 + PP_3900 0.12 +1.7 4,415,431 - PP_3900 0.12 +0.5 4,415,431 - PP_3900 0.12 -0.3 4,415,431 - PP_3900 0.12 -0.0 4,415,433 + PP_3900 0.13 +1.0 4,415,433 + PP_3900 0.13 +0.3 4,415,434 - PP_3900 0.14 +0.1 4,415,445 - PP_3900 0.18 +0.6 4,415,450 - PP_3900 0.20 +0.5 4,415,642 + +0.3 4,415,643 - -0.0 4,415,643 - -0.2 4,415,736 + +0.4 4,415,736 + -0.5 4,415,737 - -0.4 4,415,746 + -0.5 4,415,746 + +0.1 4,415,747 - -0.5 4,415,775 - +0.8 4,415,792 - -0.4 4,415,792 - -0.2 4,415,803 + +0.4 4,415,924 + PP_3901 0.48 -0.6 4,415,924 + PP_3901 0.48 +0.2 4,415,924 + PP_3901 0.48 -0.2 4,415,925 - PP_3901 0.49 +0.5 4,415,925 - PP_3901 0.49 -1.7 4,415,994 + PP_3901 0.75 -1.1 4,415,995 - PP_3901 0.75 +0.5 4,415,995 - PP_3901 0.75 +0.0 4,415,995 - PP_3901 0.75 +1.1 4,415,995 - PP_3901 0.75 +0.8 4,416,049 - +1.8 4,416,107 + +0.8 4,416,126 + -0.8 4,416,433 + PP_3902 0.83 +1.7 4,416,433 + PP_3902 0.83 +0.8 4,416,433 + PP_3902 0.83 -1.6 4,416,434 - PP_3902 0.83 +4.3 4,416,434 - PP_3902 0.83 -0.2 4,416,518 + PP_3903 0.26 +1.3 4,416,518 + PP_3903 0.26 -0.7 4,416,519 - PP_3903 0.27 -0.6 4,416,551 + PP_3903 0.46 -0.7 4,416,637 + +0.6 4,416,650 + -1.0 4,416,706 - +0.3 4,416,717 + -0.8 4,416,718 - -0.6 4,416,745 + +0.2 4,416,776 + -2.1 4,416,777 - +0.2 4,416,777 - -0.5 4,416,777 - +0.1 4,416,847 - +1.1 4,416,878 - PP_3904 0.13 -1.0 4,416,891 - PP_3904 0.18 -0.3 4,417,001 - PP_3904 0.61 -0.0 4,417,078 + +0.5 4,417,094 + +0.4 4,417,095 - -0.5 4,417,113 + -1.1 4,417,134 + +0.4 4,417,134 + +1.0 4,417,134 + +1.6 4,417,134 + +0.3 4,417,135 - -0.2 4,417,358 + PP_3905 0.45 +0.2
Or see this region's nucleotide sequence