Strain Fitness in Pseudomonas putida KT2440 around PP_3181

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,604,846	+				+0.5
3,604,956	-		PP_3180	0.17	-1.0
3,605,033	+		PP_3180	0.24	-0.5
3,605,033	+		PP_3180	0.24	+0.3
3,605,034	-		PP_3180	0.24	+0.6
3,605,045	-		PP_3180	0.25	-0.6
3,605,244	-		PP_3180	0.44	-0.0
3,605,320	+		PP_3180	0.52	+0.7
3,605,321	-		PP_3180	0.52	+0.8
3,605,457	-		PP_3180	0.65	-0.4
3,605,468	+		PP_3180	0.66	-0.3
3,605,607	-		PP_3180	0.79	-0.5
3,605,621	+		PP_3180	0.81	-0.7
3,605,649	+		PP_3180	0.83	+0.4
3,605,769	-				+0.1
3,605,769	-				-1.0
3,605,769	-				-0.5
3,605,769	-				+0.0
3,605,769	-				+0.5
3,605,769	-				-1.2
3,605,769	-				+0.2
3,605,819	+				-0.7
3,605,820	-				-0.3
3,605,884	+				+0.2
3,605,884	+				+0.8
3,605,884	+				-0.2
3,605,885	-				-0.5
3,605,920	+		PP_3181	0.11	+0.4
3,605,920	+		PP_3181	0.11	+0.6
3,605,920	+		PP_3181	0.11	+0.2
3,605,921	-		PP_3181	0.12	+1.7
3,605,996	+		PP_3181	0.19	+0.0
3,605,998	+		PP_3181	0.20	-0.1
3,605,998	+		PP_3181	0.20	-0.2
3,605,998	+		PP_3181	0.20	-1.4
3,605,998	+		PP_3181	0.20	+0.3
3,605,999	-		PP_3181	0.20	+0.8
3,606,502	-		PP_3181	0.73	+1.3
3,606,593	+		PP_3181	0.82	+1.9
3,606,629	-		PP_3181	0.86	+0.4
3,606,639	-		PP_3181	0.87	+0.0
3,606,703	+				+0.5
3,606,703	+				-0.8
3,606,704	-				+1.8
3,606,704	-				-0.3
3,606,742	+				+0.4
3,606,743	-				-0.3
3,606,743	-				-0.6
3,606,795	-				+0.6
3,606,856	+				-1.0
3,606,856	+				-1.1
3,606,857	-				-1.0
3,606,938	-				+0.3
3,606,973	+				-0.7
3,607,208	+		PP_3182	0.16	-2.3
3,607,208	+		PP_3182	0.16	-1.4
3,607,209	-		PP_3182	0.16	+1.4
3,607,209	-		PP_3182	0.16	+1.3
3,607,209	-		PP_3182	0.16	-0.3
3,607,429	-		PP_3182	0.25	-0.1
3,607,449	+		PP_3182	0.26	-1.5
3,607,451	+		PP_3182	0.26	-0.7
3,607,451	+		PP_3182	0.26	-0.5
3,607,580	-		PP_3182	0.32	+0.3
3,607,711	+		PP_3182	0.38	+1.1
3,607,712	-		PP_3182	0.38	-0.8
3,607,712	-		PP_3182	0.38	-0.1