Strain Fitness in Pseudomonas putida KT2440 around PP_3075

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,458,102	-		PP_3074	0.58	+1.1
3,458,321	-		PP_3074	0.73	+0.2
3,458,359	+		PP_3074	0.76	+0.3
3,458,363	+		PP_3074	0.76	+0.6
3,458,363	+		PP_3074	0.76	-0.0
3,458,364	-		PP_3074	0.77	+0.0
3,458,364	-		PP_3074	0.77	+0.2
3,458,382	+		PP_3074	0.78	-1.5
3,458,382	+		PP_3074	0.78	-1.7
3,458,507	-		PP_3074	0.87	-0.1
3,458,507	-		PP_3074	0.87	+0.4
3,458,623	-				-1.4
3,458,623	-				-1.4
3,458,759	-				-1.3
3,458,838	+				+1.3
3,459,059	-				-1.1
3,459,267	+		PP_3075	0.24	+1.4
3,459,268	-		PP_3075	0.24	+0.1
3,459,346	+		PP_3075	0.30	+0.0
3,459,349	+		PP_3075	0.30	+0.6
3,459,349	+		PP_3075	0.30	-0.5
3,459,841	+		PP_3075	0.64	+1.2
3,460,320	+				-1.4
3,460,320	+				-0.3
3,460,320	+				-0.1
3,460,321	-				-0.5
3,460,321	-				-0.3
3,460,321	-				-0.1
3,460,321	-				-0.8
3,460,321	-				-1.2
3,460,587	+		PP_3076	0.23	-0.3
3,460,587	+		PP_3076	0.23	-0.6
3,460,587	+		PP_3076	0.23	+0.3
3,460,588	-		PP_3076	0.23	-0.6
3,460,588	-		PP_3076	0.23	-0.7
3,460,673	+		PP_3076	0.31	-1.0
3,460,673	+		PP_3076	0.31	-0.4
3,460,674	-		PP_3076	0.31	+0.1
3,460,674	-		PP_3076	0.31	-0.8
3,460,677	+		PP_3076	0.31	-0.1
3,460,678	-		PP_3076	0.31	+0.8
3,460,678	-		PP_3076	0.31	+0.4
3,460,678	-		PP_3076	0.31	-0.1
3,460,678	-		PP_3076	0.31	+0.5
3,460,809	+		PP_3076	0.44	+0.8
3,460,809	+		PP_3076	0.44	-0.2
3,460,809	+		PP_3076	0.44	-0.6
3,460,810	-		PP_3076	0.44	-0.7
3,460,810	-		PP_3076	0.44	+0.1
3,460,833	-		PP_3076	0.47	-0.5
3,460,833	-		PP_3076	0.47	-0.0
3,460,833	-		PP_3076	0.47	+0.0
3,460,878	+		PP_3076	0.51	-1.1
3,461,062	+		PP_3076	0.69	+0.5
3,461,062	+		PP_3076	0.69	+0.7
3,461,063	-		PP_3076	0.69	-0.7
3,461,086	+		PP_3076	0.72	-0.1
3,461,136	+		PP_3076	0.76	-0.1
3,461,136	+		PP_3076	0.76	+0.2
3,461,136	+		PP_3076	0.76	-0.2
3,461,137	-		PP_3076	0.77	+0.5
3,461,137	-		PP_3076	0.77	-0.5
3,461,137	-		PP_3076	0.77	-0.2
3,461,149	-		PP_3076	0.78	+0.1
3,461,214	+		PP_3076	0.84	+0.9
3,461,229	+		PP_3076	0.86	+0.3