Strain Fitness in Pseudomonas putida KT2440 around PP_2701

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,091,276	+				-1.9
3,091,323	-				-1.7
3,091,327	+				+1.3
3,091,327	+				-0.4
3,091,327	+				-0.3
3,091,328	-				+2.4
3,091,360	-				-0.9
3,091,498	+				+0.7
3,091,498	+				+0.1
3,091,499	-				-1.6
3,091,499	-				+0.5
3,091,874	+		PP_2700	0.84	-1.4
3,091,882	+		PP_2700	0.86	-1.5
3,091,883	-		PP_2700	0.86	-1.6
3,091,883	-		PP_2700	0.86	-0.5
3,091,957	+				-0.2
3,092,032	-				+0.4
3,092,079	-				-0.7
3,092,079	-				-1.1
3,092,088	-				-1.2
3,092,121	-				-1.0
3,092,121	-				-0.1
3,092,121	-				-0.9
3,092,121	-				+0.1
3,092,167	+		PP_2701	0.14	+0.3
3,092,174	+		PP_2701	0.14	+1.1
3,092,174	+		PP_2701	0.14	+1.0
3,092,255	-		PP_2701	0.23	+2.0
3,092,263	+		PP_2701	0.24	+1.3
3,092,264	-		PP_2701	0.24	-0.0
3,092,369	+		PP_2701	0.35	+0.0
3,092,478	-		PP_2701	0.47	+0.2
3,092,601	+		PP_2701	0.60	+1.4
3,092,790	-		PP_2701	0.80	-0.3
3,092,790	-		PP_2701	0.80	+1.1
3,092,793	+		PP_2701	0.80	+0.7
3,092,794	-		PP_2701	0.80	-0.3
3,092,965	+				+0.5
3,092,966	-				+1.0
3,092,969	-				-0.3
3,092,969	-				-0.6
3,092,969	-				-0.5
3,092,969	-				-0.1
3,092,969	-				+0.3
3,092,976	+				+0.6
3,093,028	+				-0.7
3,093,028	+				-1.7
3,093,077	-		PP_2702	0.11	+0.2
3,093,220	+		PP_2702	0.23	-0.1
3,093,220	+		PP_2702	0.23	+0.9
3,093,221	-		PP_2702	0.24	+0.5
3,093,385	+		PP_2702	0.38	-1.1
3,093,385	+		PP_2702	0.38	-0.5
3,093,386	-		PP_2702	0.38	+1.5
3,093,386	-		PP_2702	0.38	-0.0
3,093,386	-		PP_2702	0.38	+0.6
3,093,530	-		PP_2702	0.51	-0.1
3,093,562	+		PP_2702	0.54	-2.7
3,093,598	+		PP_2702	0.57	-1.0
3,093,598	+		PP_2702	0.57	+0.4
3,093,598	+		PP_2702	0.57	-0.1
3,093,616	+		PP_2702	0.58	-0.5
3,093,616	+		PP_2702	0.58	-0.4
3,093,616	+		PP_2702	0.58	-0.0
3,093,616	+		PP_2702	0.58	-1.1
3,093,616	+		PP_2702	0.58	+0.3
3,093,617	-		PP_2702	0.59	-0.4
3,093,662	-		PP_2702	0.63	+0.4
3,093,662	-		PP_2702	0.63	+0.4
3,093,833	-		PP_2702	0.78	+0.9
3,093,904	+		PP_2702	0.84	-1.5
3,093,905	-		PP_2702	0.84	-0.1
3,093,905	-		PP_2702	0.84	+0.0
3,093,931	+		PP_2702	0.86	+0.1
3,093,971	-		PP_2702	0.90	+0.6
3,093,971	-		PP_2702	0.90	+0.0