Strain Fitness in Pseudomonas putida KT2440 around PP_1738

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
1,936,767	+				-0.7
1,936,767	+				-0.2
1,936,767	+				-0.7
1,936,767	+				-2.0
1,936,768	-				+0.2
1,936,768	-				+0.5
1,936,768	-				+0.1
1,936,901	+				+0.2
1,936,901	+				+0.3
1,936,901	+				-0.5
1,936,939	-				+0.6
1,936,939	-				-0.3
1,936,947	-				+1.3
1,936,970	-				+0.7
1,936,971	+				+0.6
1,936,971	+				+0.4
1,936,971	+				-0.2
1,936,971	+				+0.7
1,936,971	+				+1.7
1,936,971	+				+0.5
1,936,972	-				+0.1
1,936,972	-				+0.3
1,936,972	-				+0.0
1,936,972	-				+1.4
1,936,972	-				+1.4
1,936,972	-				+0.9
1,936,977	+				+0.0
1,936,977	+				-0.1
1,936,978	-				-0.6
1,936,992	+				+1.0
1,937,035	+		PP_1737	0.13	+1.1
1,937,036	-		PP_1737	0.13	+1.2
1,937,037	+		PP_1737	0.13	+1.1
1,937,038	-		PP_1737	0.14	-0.1
1,937,106	+		PP_1737	0.23	+1.0
1,937,106	+		PP_1737	0.23	+0.1
1,937,107	-		PP_1737	0.23	+2.2
1,937,130	+		PP_1737	0.26	+1.5
1,937,131	-		PP_1737	0.26	+0.6
1,937,174	+		PP_1737	0.32	+0.3
1,937,175	-		PP_1737	0.32	-0.3
1,937,214	+		PP_1737	0.37	+0.4
1,937,214	+		PP_1737	0.37	-0.1
1,937,215	-		PP_1737	0.37	+0.6
1,937,215	-		PP_1737	0.37	+0.7
1,937,215	-		PP_1737	0.37	+0.6
1,937,215	-		PP_1737	0.37	+0.4
1,937,215	-		PP_1737	0.37	+0.4
1,937,442	+		PP_1737	0.68	+0.5
1,937,442	+		PP_1737	0.68	+0.3
1,937,442	+		PP_1737	0.68	+0.1
1,937,442	+		PP_1737	0.68	+2.8
1,937,442	+		PP_1737	0.68	+0.5
1,937,442	+		PP_1737	0.68	-0.9
1,937,442	+		PP_1737	0.68	+1.1
1,937,442	+		PP_1737	0.68	+1.3
1,937,442	+		PP_1737	0.68	+1.3
1,937,443	-		PP_1737	0.68	+0.2
1,937,443	-		PP_1737	0.68	+1.4
1,937,443	-		PP_1737	0.68	+0.4
1,937,443	-		PP_1737	0.68	+0.8
1,937,443	-		PP_1737	0.68	+0.8
1,937,443	-		PP_1737	0.68	+0.8
1,937,443	-		PP_1737	0.68	+0.4
1,937,490	+		PP_1737	0.74	+1.1
1,937,490	+		PP_1737	0.74	+1.5
1,937,491	-		PP_1737	0.74	+0.6
1,937,491	-		PP_1737	0.74	+0.8
1,937,503	-		PP_1737	0.76	+0.7
1,937,535	+		PP_1737	0.80	-0.4
1,937,801	-				+0.9
1,937,801	-				+1.4
1,937,801	-				+1.0
1,937,801	-				+1.5
1,937,834	-				+1.9
1,937,959	+		PP_1738	0.16	+0.5
1,937,960	-		PP_1738	0.16	+2.3
1,937,960	-		PP_1738	0.16	+1.0
1,938,043	+		PP_1738	0.22	+0.4
1,938,043	+		PP_1738	0.22	+0.7
1,938,043	+		PP_1738	0.22	+0.9
1,938,043	+		PP_1738	0.22	+0.4
1,938,044	-		PP_1738	0.22	+0.9
1,938,044	-		PP_1738	0.22	-0.1
1,938,281	-		PP_1738	0.40	+1.8
1,938,299	-		PP_1738	0.42	+1.0
1,938,328	+		PP_1738	0.44	+2.1
1,938,329	-		PP_1738	0.44	+0.9
1,938,400	+		PP_1738	0.49	+1.0
1,938,400	+		PP_1738	0.49	+1.0
1,938,401	-		PP_1738	0.50	+0.4
1,938,401	-		PP_1738	0.50	+1.0
1,938,401	-		PP_1738	0.50	-1.4
1,938,517	+		PP_1738	0.59	+1.6
1,938,518	-		PP_1738	0.59	+0.4
1,938,518	-		PP_1738	0.59	-0.7
1,938,574	+		PP_1738	0.63	+0.8
1,938,575	-		PP_1738	0.63	-2.0
1,938,643	+		PP_1738	0.68	+2.4
1,938,644	-		PP_1738	0.68	+0.8
1,938,644	-		PP_1738	0.68	+0.8
1,938,644	-		PP_1738	0.68	-1.6
1,938,689	-		PP_1738	0.72	+1.4
1,938,689	-		PP_1738	0.72	+0.8
1,938,707	-		PP_1738	0.73	+1.3
1,938,793	+		PP_1738	0.80	+0.9
1,938,793	+		PP_1738	0.80	+0.2
1,938,866	-		PP_1738	0.85	+1.3
1,938,953	+				+1.2
1,938,954	-				+2.6
1,938,954	-				+0.9
1,938,967	+				+1.5
1,938,967	+				+2.3
1,938,967	+				+0.6
1,938,968	-				+0.2
1,938,968	-				+2.4
1,938,968	-				+0.1
1,939,057	+				+0.8
1,939,057	+				+0.8
1,939,057	+				+1.1
1,939,057	+				+1.4
1,939,057	+				+0.1
1,939,057	+				+0.7
1,939,058	-				+0.6
1,939,058	-				-0.1
1,939,098	-				+1.9
1,939,154	+				-0.8
1,939,155	-				+1.4
1,939,155	-				+0.4
1,939,165	+				+0.8
1,939,165	+				+0.6
1,939,166	-				+1.2
1,939,166	-				+1.2
1,939,166	-				+2.2
1,939,166	-				+2.3
1,939,191	-				+0.5
1,939,203	-				+0.1
1,939,203	-				+0.3
1,939,310	-		PP_1739	0.20	-0.8
1,939,540	+		PP_1739	0.81	+1.2
1,939,540	+		PP_1739	0.81	-0.4
1,939,609	+				-0.9
1,939,609	+				+1.5
1,939,609	+				+0.2
1,939,610	-				-0.7
1,939,610	-				-0.6
1,939,610	-				-0.2
1,939,610	-				-1.6
1,939,690	+				+0.4
1,939,691	-				-0.1
1,939,697	+				+0.3
1,939,698	-				-0.7
1,939,698	-				+1.0
1,939,884	-		PP_1740	0.12	+0.4
1,939,928	+		PP_1740	0.15	-0.3