Strain Fitness in Pseudomonas putida KT2440 around PP_1048

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
1,198,166	+		PP_1047	0.33	+0.8
1,198,266	-		PP_1047	0.40	+0.7
1,198,373	+		PP_1047	0.47	+1.2
1,198,374	-		PP_1047	0.47	-0.7
1,198,374	-		PP_1047	0.47	-0.2
1,198,462	+		PP_1047	0.53	-0.4
1,198,463	-		PP_1047	0.53	-0.3
1,198,730	+		PP_1047	0.72	-0.6
1,198,874	+				-0.9
1,198,874	+		PP_1047	0.81	-1.6
1,198,874	+		PP_1047	0.81	+0.2
1,198,875	-				-1.1
1,198,906	+		PP_1047	0.84	-0.1
1,198,948	-		PP_1047	0.87	+0.4
1,198,967	-		PP_1047	0.88	-0.1
1,198,967	-				-1.9
1,198,967	-		PP_1047	0.88	+1.3
1,199,008	+				+0.5
1,199,008	+				+0.4
1,199,009	-				-0.0
1,199,041	+				-0.0
1,199,042	-				-0.1
1,199,042	-				+0.9
1,199,140	+				+0.6
1,199,155	+				+0.5
1,199,156	-				+0.2
1,199,161	+				+0.1
1,199,524	+		PP_1048	0.31	+1.3
1,199,525	-		PP_1048	0.32	+0.4
1,199,644	+		PP_1048	0.41	+0.5
1,200,359	+				-0.7
1,200,360	-				+0.3
1,200,360	-				-0.0
1,200,360	-				-0.3
1,200,428	+		PP_1049	0.18	-1.7
1,200,428	+		PP_1049	0.18	-0.3
1,200,543	+		PP_1049	0.43	-0.2
1,200,543	+		PP_1049	0.43	+0.1
1,200,544	-				+1.8
1,200,544	-		PP_1049	0.44	+0.5
1,200,544	-		PP_1049	0.44	-1.8
1,200,544	-		PP_1049	0.44	-0.0
1,200,648	+		PP_1049	0.66	-0.3
1,200,649	-		PP_1049	0.67	+0.2
1,200,688	-		PP_1049	0.75	-0.7
1,200,688	-		PP_1049	0.75	-1.0
1,200,730	-		PP_1049	0.84	-0.7
1,200,798	+				-0.9
1,200,799	-				+0.0
1,201,157	+		PP_1050	0.82	+1.1
1,201,275	+		PP_1051	0.20	-1.7
1,201,320	+		PP_1051	0.31	+0.7
1,201,321	-		PP_1051	0.31	+1.3